Hg_chrom7_TN10mRNA_13781
Organism: Heterodera glycines Gene Locus: chr7:4195650-4198376 Feature type: polypeptideProtein Sequence
Length: 429
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.976 | 1.084 | 1.187 | 0.804 | 1.787 | 1.375 | 0.888 | 1.166 | 1.088 | 0.882 | 0.424 | 1.234 | 1.166 | 0.941 | 0.904 | 1.299 | 0.726 | 0.954 | 0.359 | 0.617 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12999
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.594
|
0.227
|
0.013
|
0.734
|
0.286
|
0.266
|
0.368
|
0.080
|
0.341
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011074
|
1.000
|
1.000
|
Hsc_gene_10821.t1
|
Hsc_gene_10821.t1
|
— |
P49596.2 Probable protein phosphatase 2C T23F11.1 [Caenorhabditis elegans]
|
KAI3410168.1 tRNA methyltransferase ppm2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004722|GO:0006470|GO:0043169
|
GO:0005575_0.909|GO:0110165_0.900|GO:0016020_0.735|GO:0008150_0.710|GO:0005622_0.690|GO:0003674_0.634|GO:0005737_0.594|GO:0043226_0.571|GO:0009987_0.563|GO:0043229_0.553|GO:0043227_0.539|GO:0065007_0.512|GO:0043231_0.504
|
IPR000222+54-62+|IPR001932+13-284_22-286_23-286_24-270+|IPR015655+23-286+|IPR036457+1-293_3-286+
|
SM00332+13-284+
|
PF00481+24-270+Protein_phosphatase_2C
|
G3DSA:3.60.40.10:FF:000016+1-292+Protein_phosphatase_2C
|
PTHR13832+23-286+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7;302-429
|
1.000
|
8-301
|
2i0o_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.824
|
46950.650
|
4.124
|
-38.000
|
26.807
|
9.091
|
50.350
|
49.650
|
9.557
|
17.249
|
54.079
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
3758.282
|
5459.850
|
2855.035
|
2312.597
|
2508.649
|
2828.662
|
2727.695
|
5469.735
|
2788.313
|
5290.416
|
4218.086
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.165
|
-1.377
|
-0.195
|
— |
0.188
|
— |
0.849
|
-0.861
|
— | — | — | — | — |
No JSON data available for plots.