Hg_chrom7_TN10mRNA_13782
Organism: Heterodera glycines Gene Locus: chr7:4198473-4200989 Feature type: polypeptideProtein Sequence
Length: 349
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.266 | 0.533 | 0.521 | 0.593 | 0.764 | 1.029 | 0.682 | 1.146 | 1.656 | 1.433 | 0.608 | 1.517 | 2.547 | 0.386 | 0.76 | 1.31 | 1.08 | 1.085 | 1.322 | 0.421 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13000
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.970
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
20-77
|
0.935
|
— | — | — | — |
0.000
|
— | — |
0.170
|
0.393
|
0.014
|
0.189
|
0.583
|
0.454
|
0.517
|
0.030
|
0.413
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004551
|
1.000
|
2.000
|
Hsc_gene_10820.t1;Hsc_gene_10820.t2
|
Hsc_gene_10820.t1;Hsc_gene_10820.t2
|
— |
P52875.2 Putative divalent cation/proton antiporter TMEM165 [Mus musculus]
|
KAI6239039.1 GDT1 family protein [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046873
|
GO:0005575_0.881|GO:0110165_0.881|GO:0016020_0.847|GO:0071944_0.761|GO:0008150_0.755|GO:0005886_0.750|GO:0005622_0.748|GO:0005737_0.748|GO:0043226_0.709|GO:0043229_0.688|GO:0043227_0.680|GO:0006810_0.671|GO:0051179_0.671|GO:0051234_0.671|GO:0043231_0.668|GO:0009987_0.603|GO:0005773_0.592|GO:0006811_0.554|GO:0012505_0.545|GO:0006812_0.531|GO:0030001_0.524
|
IPR001727+79-313_91-163_232-305+
|
— |
PF01169+91-163_232-305+Uncharacterized_protein_family_UPF0016
|
— |
PTHR12608+79-313+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-349
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.610
|
38546.920
|
7.705
|
5.000
|
17.479
|
14.613
|
39.542
|
60.458
|
10.029
|
7.450
|
48.424
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
tan
|
709.039
|
761.681
|
494.387
|
645.780
|
730.829
|
730.086
|
933.577
|
741.456
|
897.663
|
539.625
|
693.070
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.853
|
-0.375
|
0.494
|
0.146
|
— |
0.365
|
— |
0.474
|
— | — | — | — | — |
No JSON data available for plots.