Hg_chrom7_TN10mRNA_13784
Organism: Heterodera glycines Gene Locus: chr7:4210006-4226606 Feature type: polypeptideProtein Sequence
Length: 3,716
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.876 | 1.064 | 0.607 | 0.984 | 1.686 | 3.229 | 1.105 | 1.238 | 0.538 | 0.604 | 0.787 | 0.839 | 0.635 | 1.434 | 1.087 | 0.938 | 0.776 | 0.917 | 0.269 | 0.277 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13002
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
REEKRKG,KRKGKERK,KRVPLKLAEEKRNKW,KRAKEEKEENRKRTLK,RKRILKEEEERRRAKE,RKRAKEEEEENTKRTLK,KRRRAKEEEEENRKRILK,KRTLKEGEERKREKEERRR,RKREKEERRRAKEEEERRK,KREKEERRRAKEEEERRKG,RKRTLKEGEERKREEEKRR,KRTLKEGEERKREEEKRRR
|
— | — | — | — |
1-25
|
0.998
|
1.000
|
0.000
|
0.000
|
0.155
|
0.125
|
0.009
|
0.289
|
0.041
|
0.062
|
0.076
|
0.051
|
0.190
|
0.909
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004553
|
1.000
|
2.000
|
Hsc_gene_10818.t1;Hsc_gene_10818.t2
|
— | — |
A0A6P8HC43.1 Actinia tenebrosa protease inhibitors [Actinia tenebrosa]
|
KAI3410165.1 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867
|
GO:0005575_0.811|GO:0110165_0.809|GO:0008150_0.784|GO:0003674_0.619|GO:0009987_0.588|GO:0005488_0.558|GO:0005515_0.533
|
IPR000716+138-210_141-210_162-191_163-214+|IPR002223+222-275_224-274_224-275_368-382_369-422_370-421_371-421_512-565_513-564_514-564_539-549_549-564_581-634_582-633_583-633_644-697_645-696_646-696_918-973_919-972_920-972_2773-2826_2774-2825_2775-2825_2841-2894_2842-2894_2843-2893_3289-3342_3291-3341_3291-3342_3643-3703_3645-3702+|IPR006150+278-322_3142-3185_3365-3407_3457-3507+|IPR020901+252-270_399-417_542-560_611-629_674-692_950-968_2803-2821_3319-3337_3680-3698+|IPR028150+280-322_3144-3185_3366-3407_3459-3507+|IPR036857+132-211_138-212+|IPR036880+213-276_220-275_354-423_366-422_505-569_508-565_570-634_580-635_636-705_641-697_897-973_914-973_2772-2826_2772-2833_2834-2896_2837-2894_3274-3343_3289-3342_3643-3704_3645-3703+|IPR050098+2246-2833+
|
SM00131+222-275_369-422_512-565_581-634_644-697_918-973_2773-2826_2841-2894_3289-3342_3643-3703+|SM00211+163-214+|SM00289+278-322_3142-3185_3365-3407_3457-3507+
|
PF00014+224-275_370-421_513-564_582-633_645-696_919-972_2774-2825_2842-2894_3291-3342_3645-3702+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain|PF14625+280-322_3144-3185_3366-3407_3459-3507+Lustrin,_cysteine-rich_repeated_domain
|
G3DSA:4.10.410.10:FF:000020+361-425_505-570_573-637_638-702_2765-2831+Collagen,_type_VI,_alpha_3
|
PTHR10083+2246-2833+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
103-150;327-377;424-513;779-922;971-1852;1903-2775;2905-3152;3420-3472;3518-3654;3696-3716
|
10.000
|
1-102;151-326;378-423;514-778;923-970;1853-1902;2776-2904;3153-3419;3473-3517;3655-3695
|
7v1n_K
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.697
|
405808.330
|
5.367
|
-63.000
|
26.453
|
6.055
|
54.925
|
45.075
|
12.998
|
13.455
|
52.395
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
1699.893
|
1745.554
|
112.537
|
282.421
|
3466.856
|
5744.224
|
1192.658
|
789.862
|
456.206
|
2094.586
|
1392.423
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.187
|
-2.765
|
1.437
|
3.585
|
0.745
|
-2.259
|
-2.982
|
0.742
|
— | — | — | — | — |