Hg_chrom7_TN10mRNA_13789
Organism: Heterodera glycines Gene Locus: chr7:4246245-4248649 Feature type: polypeptideProtein Sequence
Length: 458
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.559 | 1.016 | 0.873 | 0.452 | 1.747 | 1.456 | 0.546 | 1.092 | 1.116 | 1.18 | 1.489 | 1.284 | 1.152 | 0.84 | 1.381 | 0.686 | 1.002 | 1.092 | 0.168 | 0.706 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13007
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRKELEDEFQKRKDQ,KRKDQYSKEMQQRVSKK
|
— | — |
30-79
|
0.844
|
— | — |
0.000
|
— | — |
0.371
|
0.206
|
0.025
|
0.639
|
0.137
|
0.226
|
0.236
|
0.012
|
0.346
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011079
|
1.000
|
1.000
|
Hsc_gene_10814.t1
|
Hsc_gene_10814.t1
|
— |
A2VE99.1 Septin-11 [Bos taurus]
|
KAI1730409.1 septin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005525
|
GO:0005575_0.913|GO:0110165_0.909|GO:0005622_0.802|GO:0043226_0.730|GO:0008150_0.724|GO:0009987_0.670|GO:0043229_0.662|GO:0005737_0.628|GO:0016020_0.585|GO:0043228_0.545|GO:0043232_0.539|GO:0071944_0.501
|
IPR016491+26-458_93-361+|IPR027417+70-361_75-332+|IPR030379+92-359_93-362+
|
— |
PF00735+93-362+Septin
|
G3DSA:3.40.50.300:FF:002048+70-361+Septin_6
|
PTHR18884+57-448+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-69;364-458
|
1.000
|
70-363
|
7m6j_E
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.642
|
52901.540
|
8.823
|
11.000
|
34.061
|
8.952
|
55.022
|
44.978
|
18.777
|
15.284
|
42.358
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
2374.194
|
942.220
|
1601.606
|
2789.954
|
3314.781
|
2936.361
|
2634.961
|
2218.914
|
2359.586
|
2452.858
|
2412.885
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.537
|
1.429
|
0.909
|
0.217
|
-0.160
|
-0.146
|
-0.508
|
0.390
|
— | — | — | — | — |
No JSON data available for plots.