Hg_chrom7_TN10mRNA_13794
Organism: Heterodera glycines Gene Locus: chr7:4259983-4265005 Feature type: polypeptideProtein Sequence
Length: 1,178
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.74 | 0.79 | 1.096 | 0.381 | 1.344 | 1.241 | 0.667 | 0.934 | 1.207 | 1.25 | 1.042 | 1.748 | 0.896 | 0.947 | 1.594 | 0.994 | 0.946 | 0.913 | 0.588 | 0.799 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13012
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.619
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKR,KKRP,RKRRRR,KKDEEVRRSKSRSRSR,KRSDNTKLSAFKKNQR,RRSKSRSRSRSPSDGRKRR,KRRRRDYSERTCETQSRRR,RRRRDYSERTCETQSRRRH,RRRDYSERTCETQSRRRHD,RRDYSERTCETQSRRRHDR,SRRRHDRRSRSPHSRRRGGGGGTSRSRSPRKSSKP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.905
|
0.051
|
0.008
|
0.152
|
0.044
|
0.043
|
0.040
|
0.051
|
0.057
|
0.011
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011083
|
1.000
|
1.000
|
Hsc_gene_10809.t1
|
Hsc_gene_10809.t1
|
— |
Q09530.1 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 [Caenorhabditis elegans]
|
KAI3413644.1 putative pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0005524
|
GO:0005575_0.869|GO:0110165_0.868|GO:0005622_0.819|GO:0008150_0.810|GO:0016020_0.782|GO:0043226_0.772|GO:0043229_0.758|GO:0009987_0.743|GO:0043227_0.708|GO:0043231_0.678|GO:0005634_0.600|GO:0008152_0.554|GO:0043170_0.554|GO:0003674_0.548|GO:0044238_0.548|GO:0009058_0.538|GO:0044237_0.538|GO:0044249_0.532|GO:0009059_0.530|GO:0006139_0.511|GO:0010467_0.509|GO:0090304_0.503
|
IPR001650+709-889_717-848_744-848+|IPR002464+633-642+|IPR003029+212-284_213-285_215-285+|IPR007502+909-999+|IPR011545+529-674+|IPR011709+1056-1133+|IPR012340+209-296_213-294+|IPR014001+516-700_528-691+|IPR027417+469-693_509-1041_694-867+|IPR048333+910-938+|IPR049588+10-79+|IPR049621+215-292+
|
SM00316+213-285+|SM00487+516-700+|SM00490+744-848+|SM00847+909-999+
|
PF00270+529-674+DEAD/DEAH_box_helicase|PF00271+717-848+Helicase_conserved_C-terminal_domain|PF00575+212-284+S1_RNA_binding_domain|PF04408+910-938+Helicase_associated_domain_(HA2),_winged-helix|PF07717+1056-1133+Oligonucleotide/oligosaccharide-binding_(OB)-fold|PF21010+939-998+Helicase_associated_domain_(HA2),_ratchet-like
|
G3DSA:1.20.120.1080:FF:000001+893-994+Pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase|G3DSA:2.40.50.140:FF:000061+210-296+ATP-dependent_RNA_helicase_DHX8|G3DSA:3.40.50.300:FF:000101+694-868+Pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase|G3DSA:3.40.50.300:FF:000191+483-693+Pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase
|
PTHR18934+448-1142+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
71-221;274-505
|
3.000
|
1-70;222-273;506-1178
|
6hyu_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.689
|
133873.800
|
8.369
|
18.000
|
30.645
|
8.574
|
51.613
|
48.387
|
16.553
|
14.092
|
46.180
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
violet
|
1662.276
|
3555.088
|
1732.082
|
1664.852
|
1920.155
|
1781.451
|
2082.269
|
1454.395
|
1378.089
|
917.532
|
1114.914
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.266
|
-1.232
|
— |
0.174
|
— |
0.235
|
-0.398
|
0.660
|
— | — | — | — | — |
No JSON data available for plots.