Hg_chrom7_TN10mRNA_13798
Organism: Heterodera glycines Gene Locus: chr7:4278814-4281200 Feature type: polypeptideProtein Sequence
Length: 294
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.424 | 0.87 | 0.618 | 0.469 | 1.19 | 1.047 | 0.972 | 0.68 | 1.134 | 1.333 | 1.031 | 2.801 | 1.228 | 0.785 | 0.902 | 0.777 | 0.781 | 0.979 | 0.523 | 0.5 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13016
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RKEGMEAFQEKRKPN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.103
|
0.893
|
0.008
|
0.185
|
0.037
|
0.088
|
0.070
|
0.011
|
0.052
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011086
|
1.000
|
1.000
|
Hsc_gene_10806.t1
|
Hsc_gene_10806.t1;Hsc_gene_10806.t2
|
— |
P34559.1 Probable enoyl-CoA hydratase, mitochondrial [Caenorhabditis elegans]
|
KAI1705509.1 enoyl-CoA hydratase/isomerase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824
|
GO:0005575_0.681|GO:0008150_0.658|GO:0003674_0.654|GO:0110165_0.626|GO:0009987_0.574|GO:0003824_0.553|GO:0016020_0.534|GO:0005622_0.510
|
IPR001753+50-293+|IPR014748+237-293+|IPR018376+135-155+|IPR029045+29-293+
|
— |
PF00378+50-293+Enoyl-CoA_hydratase/isomerase
|
G3DSA:1.10.12.10:FF:000001+235-294+Probable_enoyl-CoA_hydratase,_mitochondrial|G3DSA:3.90.226.10:FF:000019+35-235+Enoyl-CoA_hydratase,_mitochondrial
|
PTHR11941+36-292+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
277-294
|
1.000
|
1-276
|
1mj3_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.712
|
31931.110
|
8.127
|
4.000
|
23.129
|
8.163
|
41.156
|
58.844
|
12.585
|
10.544
|
49.660
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
5931.559
|
3616.938
|
2736.857
|
6044.386
|
17172.181
|
10264.401
|
6906.156
|
4230.194
|
1757.529
|
5518.258
|
3906.517
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.631
|
0.604
|
1.251
|
1.474
|
-0.728
|
-0.561
|
-1.383
|
0.850
|
-1.761
|
1.932
|
1.901
|
— | — |
No JSON data available for plots.