Hg_chrom7_TN10mRNA_13800
Organism: Heterodera glycines Gene Locus: chr7:4283381-4284203 Feature type: polypeptideProtein Sequence
Length: 223
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.574 | 0.626 | 0.734 | 0.464 | 0.972 | 0.69 | 0.908 | 1.794 | 0.897 | 1.454 | 0.951 | 2.374 | 1.495 | 0.949 | 1.647 | 1.409 | 0.956 | 0.815 | 0.0 | 0.791 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13018
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
mitochondria
|
RKRRR,RRKRR
|
8-36
|
0.971
|
— | — |
1-22
|
0.906
|
0.500
|
0.000
|
0.000
|
0.224
|
0.180
|
0.056
|
0.233
|
0.209
|
0.085
|
0.191
|
0.141
|
0.415
|
0.759
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011087
|
1.000
|
1.000
|
Hsc_gene_10805.t1
|
Hsc_gene_10805.t1
|
— | — |
KAI3413650.1 Neurotransmitter-gated ion-channel transmembrane region [Globodera pallida]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005230|GO:0006811|GO:0016020
|
— |
IPR006202+136-184+|IPR036734+128-190_136-187+
|
— |
PF02931+136-184+Neurotransmitter-gated_ion-channel_ligand_binding_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-83
|
1.000
|
84-223
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.853
|
25097.960
|
10.179
|
14.000
|
27.803
|
11.659
|
48.879
|
51.121
|
17.937
|
9.865
|
46.637
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
magenta
|
243.542
|
141.638
|
138.907
|
68.522
|
33.572
|
47.711
|
118.103
|
52.716
|
27.877
|
819.149
|
480.033
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.257
|
-1.185
|
-0.910
|
-1.061
|
0.521
|
1.316
|
— |
1.305
|
-5.000
|
— | — | — | — |