Hg_chrom7_TN10mRNA_13801
Organism: Heterodera glycines Gene Locus: chr7:4284271-4286398 Feature type: polypeptideProtein Sequence
Length: 331
(Signal peptide: 1-35)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.667 | 0.562 | 0.879 | 1.458 | 1.057 | 1.085 | 0.899 | 1.208 | 0.739 | 1.143 | 0.458 | 1.777 | 1.762 | 1.627 | 2.035 | 0.777 | 0.941 | 0.778 | 1.394 | 0.444 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13019
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
PEKRKRVAKKYR
|
— | — |
87-107
|
0.943
|
1-35
|
0.892
|
0.789
|
0.000
|
0.000
|
0.264
|
0.339
|
0.148
|
0.258
|
0.195
|
0.334
|
0.169
|
0.058
|
0.329
|
0.676
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011088
|
1.000
|
1.000
|
Hsc_gene_10804.t1
|
Hsc_gene_10804.t1
|
— | — |
NP_506862.2 EGF-like domain-containing protein [Caenorhabditis elegans];CAB04157.2 EGF-like domain-containing protein [Caenorhabditis elegans]
|
No
|
-0.310
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR000742+44-84_72-83+|IPR003582+86-124_86-125_87-124+|IPR012674+134-325_136-300+|IPR014878+141-323+|IPR045165+56-323+
|
SM00254+86-125+
|
PF01549+86-124+ShK_domain-like|PF08768+141-323+THAP4-like,_heme-binding_beta-barrel_domain
|
— |
PTHR15854+56-323+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-331
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
37673.250
|
8.269
|
10.000
|
26.586
|
12.085
|
44.411
|
55.589
|
15.408
|
11.178
|
49.547
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
purple
|
572.054
|
147.198
|
151.297
|
390.846
|
893.297
|
3189.761
|
406.329
|
289.846
|
56.908
|
409.342
|
258.299
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.272
|
1.478
|
1.160
|
1.850
|
-2.961
|
-3.569
|
0.633
|
-2.976
|
— | — | — | — |