SCN Proteipedia

Hg_chrom7_TN10mRNA_13802

Organism: Heterodera glycines Gene Locus: chr7:4285386-4290936 Feature type: polypeptide

Protein Sequence

Length: 577

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.524	0.887	0.819	0.837	0.607	0.933	0.784	1.473	1.155	1.546	0.604	1.937	1.444	0.767	1.627	1.461	0.938	0.867	1.333	1.019	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13020	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.990

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	RRISPVGPGHLRRRHRN,RRKRRISMGYSFRFSKAKR,RKRRISMGYSFRFSKAKRT,KRRISMGYSFRFSKAKRTR,RRISMGYSFRFSKAKRTRE	—	—	—	—	—	—	0.026	—	—	0.058	0.040	0.026	0.113	0.231	0.282	0.266	0.052	0.632	0.031

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004555	1.000	2.000	Hsc_gene_10803.t1;Hsc_gene_10803.t2	Hsc_gene_10803.t1;Hsc_gene_10803.t2	—	P54244.1 Acetylcholine receptor subunit alpha-type deg-3 [Caenorhabditis elegans]	KAI3413652.1 Neurotransmitter-gated ion-channel transmembrane region [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004888\|GO:0005216\|GO:0005230\|GO:0006811\|GO:0016020\|GO:0034220	GO:0005575_0.885\|GO:0110165_0.880\|GO:0016020_0.814\|GO:0008150_0.808\|GO:0071944_0.765\|GO:0009987_0.739\|GO:0005886_0.736\|GO:0065007_0.682\|GO:0050789_0.660\|GO:0003674_0.653\|GO:0050794_0.631\|GO:0032501_0.607\|GO:0050896_0.586\|GO:0051716_0.557\|GO:0023052_0.537\|GO:0007154_0.536\|GO:0043226_0.515\|GO:0051179_0.515\|GO:0006810_0.509\|GO:0051234_0.509	IPR006029+193-542+\|IPR006201+51-377+\|IPR006202+50-159+\|IPR036719+187-547+\|IPR036734+41-165_51-150+\|IPR038050+171-291+	—	PF02931+50-159+Neurotransmitter-gated_ion-channel_ligand_binding_domain\|PF02932+193-542+Neurotransmitter-gated_ion-channel_transmembrane_region	G3DSA:1.20.58.390:FF:000062+172-290+Neurotransmitter-gated_ion-channel_transmembrane_region	PTHR18945+51-377+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	388-456	2.000	1-387;457-577	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.869	65722.820	9.726	30.500	23.050	13.345	46.447	53.553	14.905	8.146	47.487

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	greenyellow	691.655	644.294	751.612	424.181	189.386	350.538	652.108	393.238	190.249	1606.293	999.417

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.740	-0.716	-1.195	0.901	0.908	—	0.872	-3.194	—	-2.876	—	—

No JSON data available for plots.

Back to Browser