Hg_chrom7_TN10mRNA_13803
Organism: Heterodera glycines Gene Locus: chr7:4298141-4301070 Feature type: polypeptideProtein Sequence
Length: 556
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.401 | 1.255 | 0.719 | 0.558 | 0.899 | 1.614 | 0.964 | 0.629 | 0.799 | 0.437 | 1.117 | 1.375 | 0.45 | 1.176 | 1.321 | 1.387 | 1.533 | 0.627 | 0.692 | 0.317 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13021
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.960
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRK,PKKRKR,RPQKRAK
|
— | — |
50-88
|
0.862
|
— | — |
0.000
|
— | — |
0.947
|
0.087
|
0.025
|
0.208
|
0.022
|
0.008
|
0.024
|
0.029
|
0.056
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011089
|
1.000
|
1.000
|
Hsc_gene_10801.t1
|
— | — | — |
KAI3413652.1 Neurotransmitter-gated ion-channel transmembrane region [Globodera pallida]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.932|GO:0110165_0.928|GO:0005622_0.839|GO:0016020_0.833|GO:0043226_0.806|GO:0043229_0.785|GO:0043227_0.740|GO:0043231_0.714|GO:0005634_0.694|GO:0031974_0.616|GO:0031981_0.616|GO:0043233_0.616|GO:0070013_0.616|GO:0005654_0.591
|
IPR036388+222-282+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
64-230;344-556
|
2.000
|
1-63;231-343
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.927
|
59208.840
|
10.363
|
28.500
|
24.460
|
4.856
|
55.216
|
44.784
|
15.108
|
9.353
|
60.432
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1012.317
|
2025.086
|
1971.021
|
907.234
|
530.438
|
826.565
|
876.487
|
2333.191
|
727.466
|
332.031
|
501.503
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.267
|
-1.296
|
-1.012
|
-0.807
|
0.655
|
— |
1.399
|
-1.272
|
— | — | — | — | — |
No JSON data available for plots.