Hg_chrom7_TN10mRNA_13804
Organism: Heterodera glycines Gene Locus: chr7:4301593-4303541 Feature type: polypeptideProtein Sequence
Length: 298
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.702 | 0.78 | 1.281 | 0.694 | 1.454 | 1.807 | 0.799 | 0.839 | 1.417 | 1.27 | 0.661 | 1.579 | 1.305 | 0.645 | 1.301 | 1.007 | 0.605 | 0.661 | 0.774 | 1.184 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13022
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKATELAGVYSDIRRIRG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.657
|
0.194
|
0.012
|
0.744
|
0.140
|
0.104
|
0.232
|
0.008
|
0.042
|
0.087
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011090
|
1.000
|
1.000
|
Hsc_gene_10800.t1
|
Hsc_gene_10800.t1
|
— |
Q9XVR6.1 Ubiquitin thioesterase otubain-like [Caenorhabditis elegans]
|
KAF7635681.1 Ubiquitin thioesterase [Meloidogyne graminicola]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016579|GO:0016787
|
GO:0008150_0.789|GO:0003674_0.748|GO:0003824_0.647|GO:0005575_0.642|GO:0110165_0.636|GO:0016787_0.582|GO:0140096_0.567|GO:0016020_0.550|GO:0008233_0.549|GO:0019783_0.536|GO:0101005_0.536
|
IPR003323+94-291+|IPR016615+14-294+|IPR019400+55-290+|IPR038765+60-291+|IPR042467+100-245+|IPR042468+59-290+
|
— |
PF10275+55-290+Peptidase_C65_Otubain
|
— |
PTHR12931+11-289+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-54
|
1.000
|
55-298
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.715
|
34128.430
|
4.587
|
-12.500
|
28.188
|
11.409
|
49.329
|
50.671
|
12.416
|
15.772
|
43.624
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
yellow
|
1944.373
|
1407.674
|
1505.604
|
1716.884
|
1845.837
|
2676.328
|
2412.903
|
3256.924
|
1112.234
|
2114.150
|
1684.757
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.132
|
0.150
|
0.298
|
— |
0.551
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.