Hg_chrom7_TN10mRNA_13807
Organism: Heterodera glycines Gene Locus: chr7:4308810-4310492 Feature type: polypeptideProtein Sequence
Length: 308
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.397 | 0.755 | 1.417 | 0.896 | 1.407 | 1.249 | 0.657 | 1.461 | 0.794 | 1.492 | 0.64 | 1.528 | 0.902 | 0.624 | 1.458 | 0.835 | 0.373 | 1.033 | 0.749 | 0.477 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13025
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.967
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — |
33-53
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.491
|
0.320
|
0.006
|
0.704
|
0.196
|
0.372
|
0.217
|
0.183
|
0.181
|
0.013
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004557
|
1.000
|
2.000
|
Hsc_gene_10796.t1;Hsc_gene_10796.t2
|
Hsc_gene_10796.t1;Hsc_gene_10796.t2
|
— |
Q17949.1 Deoxyhypusine hydroxylase [Caenorhabditis elegans]
|
KAI3413655.1 Dohh-1p [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008612|GO:0019135
|
GO:0005575_0.818|GO:0110165_0.802|GO:0008150_0.775|GO:0005622_0.751|GO:0009987_0.710|GO:0005737_0.705|GO:0003674_0.619|GO:0008152_0.558|GO:0044238_0.530|GO:0044237_0.521|GO:0009058_0.511|GO:0043170_0.506
|
IPR004155+30-59_61-90_94-123_191-220_224-253_257-286_259-283+|IPR011989+8-157_163-306+|IPR016024+22-298+|IPR027517+16-308+
|
SM00567+30-59_61-90_94-123_191-220_224-253_257-286+
|
PF03130+259-283+PBS_lyase_HEAT-like_repeat|PF13646+53-135_192-251+HEAT_repeats
|
G3DSA:1.25.10.10:FF:000099+166-308+Deoxyhypusine_hydroxylase
|
PTHR12697+22-302+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-308
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.783
|
34277.800
|
4.865
|
-10.500
|
30.519
|
8.766
|
46.753
|
53.247
|
14.286
|
16.234
|
49.351
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightgreen
|
1140.432
|
822.750
|
788.825
|
984.372
|
1188.053
|
1250.832
|
1474.656
|
933.400
|
676.958
|
1690.589
|
1256.176
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.293
|
0.122
|
0.430
|
0.240
|
— |
0.248
|
-0.530
|
0.804
|
— | — | — | — | — |
No JSON data available for plots.