Hg_chrom7_TN10mRNA_13808
Organism: Heterodera glycines Gene Locus: chr7:4310679-4313705 Feature type: polypeptideProtein Sequence
Length: 401
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.754 | 1.044 | 0.861 | 0.86 | 1.039 | 0.639 | 0.534 | 1.496 | 0.776 | 1.516 | 1.02 | 1.174 | 1.178 | 0.911 | 1.374 | 1.176 | 0.859 | 1.058 | 2.11 | 0.953 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13026
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.965
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.118
|
0.967
|
0.007
|
0.119
|
0.046
|
0.034
|
0.056
|
0.018
|
0.028
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011092
|
1.000
|
1.000
|
Hsc_gene_10795.t1
|
Hsc_gene_10795.t1
|
— |
P82922.3 Small ribosomal subunit protein mS29 [Bos taurus]
|
KAH7727347.1 Protein DAP-3 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005761|GO:0006915|GO:0015935
|
GO:0008150_0.947|GO:0005575_0.883|GO:0009987_0.881|GO:0110165_0.875|GO:0005622_0.813|GO:0016020_0.777|GO:0005737_0.765|GO:0043226_0.757|GO:0043229_0.741|GO:0043227_0.713|GO:0043231_0.706|GO:0003674_0.659|GO:0031974_0.571|GO:0043233_0.571|GO:0070013_0.571|GO:0005739_0.559
|
IPR008092+63-75_100-117_162-176_192-203_208-222_241-253_315-332+|IPR019368+28-387_79-383+
|
— |
PF10236+79-383+Mitochondrial_ribosomal_death-associated_protein_3
|
— |
PTHR12810+28-387+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-401
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.823
|
46012.890
|
9.011
|
16.000
|
27.431
|
13.217
|
47.880
|
52.120
|
16.459
|
10.973
|
47.880
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
midnightblue
|
132.827
|
44.731
|
56.926
|
54.362
|
88.516
|
103.023
|
69.351
|
63.627
|
310.509
|
168.036
|
229.096
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.670
|
— |
-0.566
|
-0.801
|
— | — | — | — | — | — |
No JSON data available for plots.