Hg_chrom7_TN10mRNA_13810
Organism: Heterodera glycines Gene Locus: chr7:4320136-4321889 Feature type: polypeptideProtein Sequence
Length: 273
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.022 | 1.363 | 0.533 | 0.505 | 1.404 | 0.845 | 1.308 | 0.733 | 0.895 | 1.238 | 1.055 | 2.37 | 1.221 | 0.282 | 0.972 | 1.099 | 0.661 | 1.11 | 0.0 | 0.862 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13028
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.469
|
0.251
|
0.040
|
0.472
|
0.069
|
0.144
|
0.071
|
0.027
|
0.074
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011094
|
1.000
|
1.000
|
Hsc_gene_10792.t1
|
Hsc_gene_10792.t1
|
— |
Q54QR2.1 Proteasome subunit beta type-7 [Dictyostelium discoideum]
|
KAF7632882.1 Pr_beta_C domain-containing protein [Meloidogyne graminicola]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004298|GO:0005839|GO:0051603
|
GO:0005575_0.886|GO:0110165_0.869|GO:0005622_0.802|GO:0016020_0.714|GO:0043226_0.692|GO:0043229_0.689|GO:0008150_0.652|GO:0043227_0.641|GO:0043231_0.626|GO:0032991_0.617|GO:0005737_0.568|GO:1902494_0.560|GO:0140535_0.551|GO:1905368_0.548|GO:1905369_0.548|GO:0000502_0.547|GO:0003674_0.501
|
IPR000243+60-75_180-191_191-202_216-227+|IPR001353+50-230+|IPR023333+43-238_52-230+|IPR029055+41-239_53-273+
|
— |
PF00227+50-230+Proteasome_subunit
|
— |
PTHR32194+43-238+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-273
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.823
|
29631.830
|
7.716
|
3.000
|
24.542
|
8.791
|
45.421
|
54.579
|
13.187
|
11.355
|
50.549
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
4564.887
|
3819.059
|
2562.657
|
6038.786
|
6280.231
|
5257.091
|
3173.867
|
3937.330
|
2785.923
|
6231.055
|
4754.569
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.805
|
0.524
|
1.346
|
— |
-0.241
|
-0.717
|
-0.521
|
— |
-1.273
|
— | — | — | — |
No JSON data available for plots.