Hg_chrom7_TN10mRNA_13811
Organism: Heterodera glycines Gene Locus: chr7:4321985-4323635 Feature type: polypeptideProtein Sequence
Length: 274
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.509 | 1.273 | 0.863 | 0.252 | 1.338 | 1.217 | 0.521 | 0.912 | 1.135 | 1.036 | 0.885 | 1.288 | 1.419 | 0.842 | 2.458 | 1.199 | 0.658 | 0.664 | 1.684 | 1.288 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13029
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRKRQMAYEEQTRRRNE
|
33-53
|
0.999
|
13-53
|
1.000
|
— | — |
0.000
|
— | — |
0.162
|
0.834
|
0.062
|
0.143
|
0.069
|
0.025
|
0.039
|
0.016
|
0.033
|
0.011
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011095
|
1.000
|
1.000
|
Hsc_gene_10791.t1
|
Hsc_gene_10791.t1
|
— |
Q9ZDY0.1 Chaperone protein DnaJ [Rickettsia prowazekii str. Madrid E]
|
KAI3413661.1 DnaJ sub A member 3, mitochondrial [Globodera pallida]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.844|GO:0110165_0.842|GO:0005622_0.793|GO:0008150_0.773|GO:0016020_0.773|GO:0043226_0.708|GO:0009987_0.694|GO:0005737_0.689|GO:0043229_0.661|GO:0043227_0.655|GO:0043231_0.610|GO:0003674_0.513
|
IPR001623+54-112_55-109_55-117_55-120_57-75_75-90_92-112+|IPR036869+39-137_53-123+|IPR051938+49-191+
|
SM00271+54-112+
|
PF00226+55-117+DnaJ_domain
|
— |
PTHR44145+49-191+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
272-274
|
1.000
|
1-271
|
2dn9_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.760
|
32720.030
|
10.273
|
16.500
|
32.482
|
13.504
|
55.109
|
44.891
|
19.708
|
12.774
|
40.876
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
839.708
|
760.350
|
430.462
|
493.091
|
614.668
|
599.457
|
765.908
|
730.219
|
405.847
|
1721.530
|
1157.666
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.051
|
-0.762
|
0.305
|
0.286
|
— |
0.365
|
— |
0.212
|
— | — | — | — | — |
No JSON data available for plots.