SCN Proteipedia

Hg_chrom7_TN10mRNA_13812

Organism: Heterodera glycines Gene Locus: chr7:4323796-4327462 Feature type: polypeptide

Protein Sequence

Length: 696

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.785	0.969	1.097	0.545	1.317	1.363	0.65	0.934	1.309	1.262	1.176	1.183	1.357	0.635	1.232	0.78	0.707	1.197	0.442	1.014	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13030	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-pJ2_J3_J4	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KRIAEISRKGFSLPKIAKK,KRVEHVQFGLVLGEDRKKF	—	—	—	—	—	—	0.000	—	—	0.369	0.297	0.071	0.701	0.171	0.240	0.121	0.087	0.072	0.096

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011096	1.000	1.000	Hsc_gene_10790.t1	Hsc_gene_10790.t1	—	Q19825.2 Probable arginine--tRNA ligase, cytoplasmic [Caenorhabditis elegans]	KAI1732475.1 tRNA synthetases class I (R) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0004812\|GO:0004814\|GO:0005524\|GO:0005737\|GO:0006418\|GO:0006420	GO:0005575_0.843\|GO:0110165_0.778\|GO:0008150_0.732\|GO:0005622_0.712\|GO:0005737_0.673\|GO:0009987_0.621\|GO:0016020_0.590\|GO:0043226_0.543\|GO:0008152_0.522\|GO:0043229_0.518\|GO:0003674_0.513\|GO:0044238_0.506\|GO:0043227_0.501	IPR001278+100-696_102-696_103-696_219-234_234-250_258-271_401-422+\|IPR001412+227-238+\|IPR005148+103-193_105-192+\|IPR008909+561-696+\|IPR009080+555-696+\|IPR014729+215-552+\|IPR035684+216-547_220-484+\|IPR036695+99-209_106-205+	SM00836+561-696+\|SM01016+103-193+	PF00750+216-547+tRNA_synthetases_class_I_(R)\|PF03485+105-192+Arginyl_tRNA_synthetase_N_terminal_domain\|PF05746+561-696+DALR_anticodon_binding_domain	G3DSA:1.10.730.10:FF:000064+555-696+Probable_arginine--tRNA_ligase,_cytoplasmic\|G3DSA:3.40.50.620:FF:000084+213-553+arginine--tRNA_ligase,_cytoplasmic	PTHR11956+100-696+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	48-93	2.000	1-47;94-696	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.547	79435.020	7.254	5.500	29.598	10.776	48.851	51.149	15.661	13.937	44.971

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	yellow	2285.438	2102.932	1700.325	2909.303	3356.564	2646.759	2585.034	1664.693	1732.377	2337.403	2078.106

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.535	0.331	0.883	0.174	-0.328	—	-0.774	0.778	—	—	—	—	—

No JSON data available for plots.

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