Hg_chrom7_TN10mRNA_13813
Organism: Heterodera glycines Gene Locus: chr7:4327601-4328136 Feature type: polypeptideProtein Sequence
Length: 149
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.39 | 1.561 | 1.586 | 0.463 | 1.342 | 0.516 | 0.799 | 0.0 | 1.491 | 1.451 | 1.017 | 2.764 | 1.678 | 0.387 | 1.233 | 0.767 | 0.88 | 0.61 | 0.0 | 1.579 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13031
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.644
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.634
|
0.132
|
0.099
|
0.607
|
0.092
|
0.127
|
0.098
|
0.079
|
0.192
|
0.138
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011097
|
1.000
|
1.000
|
Hsc_gene_10789.t1
|
Hsc_gene_10789.t1
|
— |
A8XT81.1 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Caenorhabditis briggsae]
|
KAI3413663.1 DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Globodera pallida]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003899|GO:0006351
|
GO:0005575_0.892|GO:0110165_0.882|GO:0005622_0.839|GO:0016020_0.797|GO:0043226_0.786|GO:0043229_0.770|GO:0043227_0.744|GO:0043231_0.726|GO:0005634_0.617|GO:0031974_0.576|GO:0043233_0.576|GO:0070013_0.572|GO:0031981_0.564|GO:0005654_0.554|GO:0032991_0.533|GO:0008150_0.523
|
IPR005570+1-147_1-148_2-146_7-146+|IPR012340+4-146_6-148+
|
SM00658+2-146+
|
PF03870+7-146+RNA_polymerase_Rpb8
|
G3DSA:2.40.50.140:FF:000073+6-148+DNA-directed_RNA_polymerases_I,_II,_and_III_subunit_RPABC3
|
PTHR10917+1-147+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-149
|
9mu9_H
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.640
|
17290.700
|
4.513
|
-6.000
|
29.530
|
11.409
|
48.993
|
51.007
|
12.752
|
16.779
|
43.624
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1261.862
|
1150.697
|
1088.118
|
814.986
|
818.487
|
708.582
|
1008.850
|
1101.631
|
1735.296
|
1709.917
|
1720.793
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.309
|
-0.635
|
-0.309
|
— |
-0.193
|
0.522
|
0.531
|
— | — | — | — | — | — |
No JSON data available for plots.