Hg_chrom7_TN10mRNA_13814
Organism: Heterodera glycines Gene Locus: chr7:4329550-4334555 Feature type: polypeptideProtein Sequence
Length: 1,007
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.716 | 1.363 | 0.921 | 0.377 | 1.456 | 1.502 | 0.331 | 0.894 | 1.258 | 1.315 | 1.083 | 0.935 | 1.517 | 0.878 | 1.135 | 1.277 | 0.733 | 0.752 | 0.84 | 1.022 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13032
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.598
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RPEKRAK,KRWADEWRSQAKQDKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.591
|
0.115
|
0.009
|
0.557
|
0.202
|
0.253
|
0.308
|
0.073
|
0.070
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011098
|
1.000
|
1.000
|
Hsc_gene_10788.t1
|
Hsc_gene_10787.t1;Hsc_gene_10788.t1;Hsc_gene_10871.t1
|
— |
Q9NR09.3 Baculoviral IAP repeat-containing protein 6 [Homo sapiens]
|
KAI3413664.1 Baculoviral IAP repeat-containing protein 6 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.919|GO:0005575_0.833|GO:0110165_0.818|GO:0009987_0.791|GO:0003674_0.721|GO:0005622_0.715|GO:0016020_0.714|GO:0008152_0.658|GO:0044238_0.652|GO:0043226_0.647|GO:0043170_0.641|GO:0043229_0.634|GO:0065007_0.625|GO:0050789_0.598|GO:0019538_0.597|GO:0005737_0.596|GO:0043227_0.571|GO:0050794_0.567|GO:0043231_0.535|GO:0003824_0.521
|
IPR000608+765-932_768-901_769-905+|IPR016135+720-1007_758-937+
|
SM00212+768-932+
|
PF00179+769-905+Ubiquitin-conjugating_enzyme
|
— |
PTHR46116+415-1000+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
428-476
|
2.000
|
1-427;477-1007
|
8e2i_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.621
|
116427.750
|
6.355
|
-2.000
|
28.302
|
11.817
|
53.426
|
46.574
|
14.499
|
13.803
|
43.893
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
2148.871
|
2213.838
|
1883.406
|
2190.940
|
2979.995
|
2677.527
|
2487.170
|
1927.963
|
1605.476
|
2061.891
|
1866.284
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.463
|
-0.152
|
0.327
|
0.412
|
— | — |
-0.579
|
0.509
|
— | — | — | — | — |
No JSON data available for plots.