Hg_chrom7_TN10mRNA_13819
Organism: Heterodera glycines Gene Locus: chr7:4354201-4355920 Feature type: polypeptideProtein Sequence
Length: 333
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.663 | 0.908 | 1.365 | 0.725 | 0.851 | 0.616 | 0.715 | 1.201 | 1.001 | 1.055 | 1.092 | 1.59 | 1.418 | 1.155 | 1.348 | 0.901 | 0.738 | 1.502 | 1.155 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13037
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.002
|
— | — |
0.446
|
0.317
|
0.197
|
0.489
|
0.298
|
0.265
|
0.138
|
0.021
|
0.188
|
0.423
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011103
|
1.000
|
1.000
|
Hsc_gene_10782.t1
|
Hsc_gene_10782.t1
|
— | — |
WP_144859000.1 non-homologous end-joining DNA ligase [Mesorhizobium sp. J18];TWH01138.1 bifunctional non-homologous end joining protein LigD [Mesorhizobium sp. J18]
|
WP_339952323
|
0.580
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.928|GO:0009987_0.855|GO:0008152_0.801|GO:0044238_0.784|GO:0043170_0.752|GO:0006139_0.721|GO:0090304_0.699|GO:0003674_0.687|GO:0006259_0.676|GO:0003824_0.595|GO:0044237_0.576|GO:0009058_0.566|GO:0044249_0.543|GO:0009059_0.523|GO:0016740_0.506|GO:0016787_0.504|GO:0034654_0.502
|
IPR014145+52-297_68-320+|IPR052171+51-332+
|
— |
PF21686+68-320+LigD,_primase-polymerase_domain
|
— |
PTHR42705+51-332+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
307-333
|
1.000
|
1-306
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.766
|
37702.380
|
8.368
|
8.000
|
28.829
|
11.712
|
45.946
|
54.054
|
16.216
|
12.613
|
51.952
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
1111.834
|
3496.938
|
302.841
|
277.637
|
229.381
|
225.548
|
487.042
|
174.180
|
127.995
|
2820.688
|
1666.677
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.760
|
-3.792
|
— |
-0.307
|
— |
1.122
|
-0.481
|
1.628
|
-4.579
|
— |
-3.329
|
— | — |
No JSON data available for plots.