Hg_chrom7_TN10mRNA_13821
Organism: Heterodera glycines Gene Locus: chr7:4359779-4362395 Feature type: polypeptideProtein Sequence
Length: 459
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.115 | 0.912 | 1.03 | 0.526 | 0.871 | 1.285 | 0.908 | 2.179 | 0.968 | 1.295 | 0.693 | 0.897 | 1.452 | 1.006 | 1.156 | 1.027 | 0.643 | 0.693 | 1.173 | 1.089 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13039
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.893
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-18
|
0.978
|
1.000
|
0.000
|
0.000
|
0.113
|
0.320
|
0.044
|
0.226
|
0.198
|
0.196
|
0.229
|
0.017
|
0.104
|
0.758
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011105
|
1.000
|
1.000
|
Hsc_gene_10780.t1
|
Hsc_gene_10780.t1
|
— |
P19223.1 Carboxypeptidase B [Rattus norvegicus]
|
KAF7635002.1 Peptidase_M14 domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004181|GO:0006508|GO:0008270
|
GO:0003674_0.711|GO:0008150_0.635|GO:0005575_0.634|GO:0110165_0.625|GO:0003824_0.583|GO:0016787_0.523|GO:0140096_0.502
|
IPR000834+135-432_142-430_161-173_186-200_186-208_274-282_328-341+|IPR003146+34-106+|IPR036990+22-115+
|
SM00631+135-432+
|
PF00246+142-430+Zinc_carboxypeptidase|PF02244+34-106+Carboxypeptidase_activation_peptide
|
G3DSA:3.40.630.10:FF:000084+129-447+Carboxypeptidase_B2
|
PTHR11705+5-444+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
449-459
|
1.000
|
1-448
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.712
|
51327.900
|
7.158
|
7.000
|
25.490
|
14.815
|
45.534
|
54.466
|
14.597
|
10.893
|
49.237
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
262.478
|
21.094
|
44.158
|
23.231
|
115.001
|
1513.056
|
276.977
|
385.453
|
48.921
|
219.539
|
146.417
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.837
|
— |
-0.818
|
2.276
|
3.733
|
-2.439
|
-2.091
|
— | — | — | — | — | — |