Hg_chrom7_TN10mRNA_13822
Organism: Heterodera glycines Gene Locus: chr7:4365392-4368417 Feature type: polypeptideProtein Sequence
Length: 426
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.119 | 0.764 | 0.384 | 1.133 | 0.509 | 0.843 | 0.391 | 0.587 | 0.991 | 2.125 | 0.213 | 1.933 | 1.565 | 0.948 | 1.15 | 1.811 | 0.616 | 1.316 | 1.083 | 0.967 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13040
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RREMWAELSAAERREHK
|
— | — |
75-95
|
1.000
|
— | — |
0.000
|
— | — |
0.070
|
0.050
|
0.015
|
0.110
|
0.274
|
0.222
|
0.164
|
0.022
|
0.817
|
0.099
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011106
|
1.000
|
1.000
|
Hsc_gene_10779.t1
|
Hsc_gene_10779.t1
|
— |
G5EEB1.1 FMRFamide peptide receptor frpr-18 [Caenorhabditis elegans]
|
AFJ93333.1 VRFamide receptor [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.961|GO:0009987_0.922|GO:0065007_0.875|GO:0050789_0.851|GO:0050896_0.842|GO:0050794_0.832|GO:0051716_0.829|GO:0007154_0.822|GO:0023052_0.819|GO:0007165_0.794|GO:0003674_0.783|GO:0005575_0.770|GO:0110165_0.768|GO:0007186_0.715|GO:0016020_0.674|GO:0071944_0.668|GO:0005886_0.664|GO:0038023_0.641|GO:0060089_0.641|GO:0004888_0.633|GO:0004930_0.553|GO:0032501_0.535|GO:0005488_0.530
|
IPR000276+63-87_72-366_79-342_96-117_146-168_152-168_242-265_292-316_333-359+|IPR017452+78-351+|IPR053352+61-371+
|
SM01381+72-366+
|
PF00001+79-342+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR47323+61-371+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-426
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.848
|
47013.400
|
8.475
|
10.500
|
13.380
|
11.502
|
36.385
|
63.615
|
8.216
|
5.164
|
51.643
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
188.861
|
386.856
|
278.388
|
143.195
|
63.028
|
78.902
|
154.376
|
189.925
|
7.070
|
335.464
|
194.724
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.704
|
-1.571
|
-0.850
|
-1.218
|
— |
0.980
|
1.166
|
— | — |
4.579
|
— | — | — |
No JSON data available for plots.