SCN Proteipedia

Hg_chrom7_TN10mRNA_13830

Organism: Heterodera glycines Gene Locus: chr7:4388107-4392039 Feature type: polypeptide

Protein Sequence

Length: 776

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.854	1.229	1.031	0.489	1.095	0.958	0.598	1.353	1.317	1.306	0.644	1.516	1.289	0.966	1.315	0.902	1.014	1.347	0.595	0.455	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13048	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.777

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	—	13-33	0.888	21-44	0.958	—	—	0.001	—	—	0.098	0.966	0.005	0.219	0.074	0.061	0.101	0.058	0.040	0.024

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011112	1.000	1.000	Hsc_gene_10770.t1	Hsc_gene_10770.t1	—	Q8R2Q4.2 Ribosome-releasing factor 2, mitochondrial [Mus musculus]	KAI6219152.1 Tr-type G domain-containing protein [Aphelenchoides fujianensis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003924\|GO:0005525	GO:0005575_0.858\|GO:0110165_0.852\|GO:0005622_0.761\|GO:0005737_0.712\|GO:0016020_0.677\|GO:0008150_0.598\|GO:0043226_0.598\|GO:0043229_0.583\|GO:0043227_0.555\|GO:0009987_0.539\|GO:0043231_0.532	IPR000640+681-776_682-772+\|IPR000795+40-328_41-326_44-57_90-98_110-120_126-137_162-171+\|IPR005225+41-190+\|IPR005517+542-679+\|IPR009000+313-427+\|IPR009022+467-542+\|IPR014721+547-682+\|IPR020568+542-679+\|IPR027417+34-334_39-326+\|IPR031157+83-98+\|IPR035647+467-543_681-772+\|IPR035649+684-768+\|IPR041095+467-539+\|IPR053905+340-424+	SM00838+681-776+\|SM00889+542-679+	PF00009+41-326+Elongation_factor_Tu_GTP_binding_domain\|PF00679+682-772+Elongation_factor_G_C-terminus\|PF14492+467-539+Elongation_Factor_G,_domain_III\|PF22042+340-424+Elongation_factor_G_domain_2	G3DSA:3.40.50.300:FF:000514+36-334+Ribosome-releasing_factor_2,_mitochondrial	PTHR43261+22-770+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	776-776	1.000	1-775	6bk7_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.569	86828.440	6.395	-1.500	25.644	9.665	47.165	52.835	13.402	12.242	51.160

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	darkturquoise	2014.566	3457.884	1590.077	1748.311	1881.056	1730.014	2439.439	2003.608	2129.817	1647.469	1854.189

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.351	-1.121	0.246	—	—	0.506	—	0.426	—	—	—	—	—

No JSON data available for plots.

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