Hg_chrom7_TN10mRNA_13831
Organism: Heterodera glycines Gene Locus: chr7:4392357-4394037 Feature type: polypeptideProtein Sequence
Length: 185
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.069 | 1.006 | 1.278 | 0.746 | 1.441 | 1.663 | 0.193 | 1.351 | 0.601 | 1.023 | 0.819 | 3.18 | 1.051 | 1.04 | 2.096 | 0.463 | 0.532 | 0.491 | 2.079 | 1.431 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13049
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
18-40
|
0.982
|
— | — | — | — |
0.000
|
— | — |
0.085
|
0.960
|
0.005
|
0.124
|
0.010
|
0.023
|
0.036
|
0.006
|
0.058
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011113
|
1.000
|
1.000
|
Hsc_gene_10769.t1
|
Hsc_gene_10769.t1
|
— |
Q0MQE8.3 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Pongo abelii]
|
KIH55498.1 complex 1 protein [Ancylostoma duodenale];RCN33131.1 complex 1 protein [Ancylostoma caninum]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006120
|
GO:0005575_0.860|GO:0110165_0.858|GO:0005622_0.814|GO:0043226_0.766|GO:0016020_0.760|GO:0005737_0.745|GO:0043229_0.741|GO:0043227_0.721|GO:0043231_0.697|GO:0005739_0.562|GO:0008150_0.506
|
IPR008011+21-81+|IPR033034+10-142+|IPR045292+19-96+
|
— |
PF05347+21-81+Complex_1_protein_(LYR_family)
|
— |
PTHR12868+10-142+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
156-185
|
1.000
|
1-155
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.584
|
22344.380
|
7.323
|
2.500
|
34.054
|
14.054
|
51.351
|
48.649
|
18.378
|
15.676
|
39.459
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1330.140
|
505.402
|
892.384
|
874.121
|
1184.366
|
1181.727
|
830.955
|
1321.408
|
1749.829
|
1960.605
|
1870.273
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.591
|
0.654
|
— |
0.406
|
— |
-0.498
|
— |
-0.526
|
— | — | — | — | — |
No JSON data available for plots.