Hg_chrom7_TN10mRNA_13832
Organism: Heterodera glycines Gene Locus: chr7:4394496-4397736 Feature type: polypeptideProtein Sequence
Length: 622
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.823 | 1.009 | 1.082 | 1.608 | 1.206 | 1.237 | 0.287 | 1.206 | 1.072 | 1.173 | 1.072 | 1.702 | 1.652 | 1.268 | 1.378 | 0.896 | 0.58 | 0.974 | 0.495 | 0.426 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13050
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.834
|
0.059
|
0.003
|
0.359
|
0.092
|
0.052
|
0.051
|
0.021
|
0.036
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004267
|
2.000
|
1.000
|
Hsc_gene_10768.t1
|
Hsc_gene_10768.t1
|
— | — |
KAI1709131.1 cutC family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270
|
GO:0008150_0.960|GO:0065007_0.934|GO:0005575_0.930|GO:0009987_0.930|GO:0110165_0.928|GO:0050789_0.923|GO:0050794_0.912|GO:0003674_0.893|GO:0032501_0.870|GO:0005622_0.862|GO:0050896_0.843|GO:0016020_0.831|GO:0008152_0.804|GO:0043170_0.804|GO:0043226_0.804|GO:0048519_0.802|GO:0019222_0.799|GO:0044238_0.793|GO:0048523_0.785|GO:0060255_0.784|GO:0009058_0.779|GO:0009059_0.777|GO:0044237_0.777|GO:0044249_0.777|GO:0043229_0.774|GO:0031323_0.772|GO:0010467_0.769|GO:0009889_0.755|GO:0010556_0.755|GO:0031326_0.755|GO:0019538_0.754|GO:0051239_0.752|GO:0010468_0.747|GO:0048583_0.747|GO:0043227_0.741|GO:0043412_0.724|GO:0006950_0.722|GO:0005737_0.719|GO:0036211_0.719|GO:0009892_0.718|GO:0010605_0.713|GO:0003824_0.710|GO:0140096_0.710|GO:0031324_0.709|GO:0043231_0.707|GO:0009605_0.700|GO:0009890_0.699|GO:0031327_0.699|GO:0009056_0.697|GO:0044419_0.697|GO:0051241_0.697|GO:0010558_0.696|GO:0009607_0.693|GO:0043207_0.693|GO:0080134_0.693|GO:0009057_0.692|GO:0006952_0.691|GO:0016740_0.691|GO:0051707_0.690|GO:0016567_0.689|GO:0032446_0.689|GO:0043687_0.689|GO:0070647_0.689|GO:0098542_0.686|GO:0010629_0.685|GO:0030163_0.685|GO:0006508_0.684|GO:0001816_0.682|GO:0001817_0.682|GO:0031347_0.682|GO:0032101_0.682|GO:0140546_0.682|GO:0000209_0.679|GO:0002831_0.679|GO:0051603_0.678|GO:0006511_0.676|GO:0010498_0.676|GO:0019941_0.676|GO:0043632_0.676|GO:0009615_0.675|GO:0001818_0.674|GO:0016746_0.673|GO:0051607_0.673|GO:0004842_0.672|GO:0016755_0.672|GO:0019787_0.672|GO:0032479_0.670|GO:0032480_0.670|GO:0032606_0.670|GO:0032608_0.670|GO:0032648_0.670|GO:0043161_0.670|GO:0050688_0.670|GO:0050691_0.670|GO:0070936_0.670|GO:0061630_0.669|GO:0061659_0.669|GO:0005634_0.668|GO:0031974_0.622|GO:0031981_0.622|GO:0043233_0.622|GO:0070013_0.622|GO:0005654_0.612|GO:0005829_0.611
|
IPR002867+355-421_372-421+|IPR044066+269-502+|IPR047545+371-426+|IPR047546+437-493+|IPR051628+182-515+
|
SM00647+355-421+
|
PF01485+372-421+IBR_domain,_a_half_RING-finger_domain
|
— |
PTHR22770+182-515+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
522-622
|
1.000
|
1-521
|
7m4o_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.649
|
71335.420
|
7.724
|
11.500
|
29.421
|
10.450
|
48.392
|
51.608
|
16.238
|
13.183
|
47.267
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
996.402
|
443.905
|
489.718
|
1004.633
|
1317.139
|
1143.461
|
1635.547
|
718.978
|
718.052
|
1288.201
|
1043.851
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.041
|
1.146
|
0.358
|
-0.189
|
0.526
|
-0.777
|
1.328
|
— | — | — | — | — |
No JSON data available for plots.