SCN Proteipedia

Hg_chrom7_TN10mRNA_13833

Organism: Heterodera glycines Gene Locus: chr7:4398311-4402149 Feature type: polypeptide

Protein Sequence

Length: 575

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.153	1.335	0.601	0.24	0.812	2.319	0.58	0.87	0.657	1.387	0.659	1.739	0.58	1.371	1.562	1.466	0.884	0.817	0.268	0.307	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13051	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Not_Clustered	0.645

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RHRR	34-60	0.990	53-110	0.995	—	—	0.000	—	—	0.598	0.103	0.073	0.292	0.033	0.022	0.106	0.018	0.178	0.223

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011114	1.000	1.000	Hsc_gene_10767.t1	Hsc_gene_10767.t1	—	—	KAH7697022.1 NHR1 to TAF family protein, partial [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005669\|GO:0006351\|GO:0006352	GO:0008150_0.948\|GO:0009987_0.897\|GO:0003674_0.851\|GO:0005488_0.837\|GO:0005575_0.820\|GO:0110165_0.817\|GO:0008152_0.788\|GO:0043170_0.788\|GO:0009058_0.780\|GO:0044238_0.780\|GO:0009059_0.773\|GO:0010467_0.773\|GO:0044237_0.773\|GO:0044249_0.773\|GO:0006139_0.764\|GO:0034654_0.764\|GO:0016070_0.757\|GO:0090304_0.757\|GO:0141187_0.753\|GO:0005622_0.752\|GO:0032774_0.752\|GO:0016020_0.737\|GO:0006351_0.731\|GO:0043226_0.720\|GO:0006366_0.714\|GO:0043229_0.704\|GO:0065007_0.670\|GO:0050789_0.660\|GO:0043227_0.658\|GO:0005515_0.652\|GO:0050794_0.644\|GO:0043231_0.640\|GO:0005634_0.582\|GO:0019222_0.576\|GO:0080090_0.571\|GO:0031323_0.567\|GO:0060255_0.561\|GO:0009889_0.555\|GO:0010468_0.555\|GO:0010556_0.555\|GO:0031326_0.555\|GO:0006352_0.547\|GO:0006367_0.547\|GO:0032991_0.543\|GO:0019219_0.535\|GO:0008134_0.534\|GO:0140297_0.534\|GO:0051252_0.533\|GO:0006355_0.524\|GO:2001141_0.524\|GO:0031974_0.502	IPR003894+94-189_96-182_99-180+\|IPR007900+342-549_345-559+\|IPR037249+94-189_97-179+\|IPR045144+79-342+	SM00549+96-182+	PF05236+342-549+Transcription_initiation_factor_TFIID_component_TAF4_family\|PF07531+99-180+NHR1_homology_to_TAF	—	PTHR15138+79-342+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-3;175-529;574-575	2.000	4-174;530-573	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.927	63032.430	10.726	27.000	21.913	5.217	52.348	47.652	13.739	8.174	52.696

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	greenyellow	1525.880	1372.386	1087.305	1001.624	1160.667	1327.169	2574.764	963.932	2118.817	1528.668	1781.589

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.566	-0.592	—	0.181	0.208	0.967	-0.567	1.560	—	—	—	—	—

No JSON data available for plots.

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