Hg_chrom7_TN10mRNA_13834
Organism: Heterodera glycines Gene Locus: chr7:4402395-4402953 Feature type: polypeptideProtein Sequence
Length: 105
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.883 | 0.886 | 0.346 | 0.0 | 0.952 | 0.244 | 1.02 | 1.905 | 1.481 | 1.158 | 1.01 | 3.922 | 0.529 | 0.549 | 1.944 | 0.544 | 0.781 | 0.577 | 0.0 | 1.12 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13052
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.895
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
17-37
|
0.975
|
— | — | — | — |
0.015
|
— | — |
0.146
|
0.946
|
0.129
|
0.089
|
0.209
|
0.039
|
0.113
|
0.025
|
0.053
|
0.232
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011115
|
1.000
|
1.000
|
Hsc_gene_10766.t1
|
Hsc_gene_10766.t1
|
— |
P91454.1 Mitochondrial import inner membrane translocase subunit TIM14 [Caenorhabditis elegans]
|
PIO68352.1 DnaJ domain protein [Teladorsagia circumcincta]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.901|GO:0110165_0.893|GO:0005622_0.792|GO:0016020_0.784|GO:0043226_0.762|GO:0043229_0.735|GO:0005737_0.727|GO:0043227_0.696|GO:0043231_0.689|GO:0008150_0.676|GO:0005739_0.510
|
IPR001623+55-105_58-103+|IPR036869+41-105_45-104+
|
— | — |
G3DSA:1.10.287.110:FF:000001+41-105+Import_inner_membrane_translocase_subunit_tim14
|
PTHR12763+2-105+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-105
|
2guz_O
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.602
|
11554.570
|
10.972
|
11.000
|
27.619
|
9.524
|
40.952
|
59.048
|
20.000
|
7.619
|
45.714
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
376.017
|
364.076
|
342.048
|
349.176
|
374.793
|
291.918
|
331.938
|
343.996
|
475.517
|
389.206
|
426.196
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.321
|
-0.198
|
— | — |
-0.346
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.