Hg_chrom7_TN10mRNA_13836
Organism: Heterodera glycines Gene Locus: chr7:4407501-4410632 Feature type: polypeptideProtein Sequence
Length: 407
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.971 | 1.428 | 1.251 | 0.424 | 1.269 | 1.134 | 0.761 | 1.351 | 0.546 | 1.129 | 0.893 | 2.312 | 1.365 | 0.567 | 1.504 | 0.878 | 0.846 | 0.782 | 0.756 | 0.867 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13054
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.955
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.657
|
0.320
|
0.012
|
0.650
|
0.098
|
0.049
|
0.052
|
0.029
|
0.151
|
0.130
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001883
|
3.000
|
1.000
|
Hsc_gene_10764.t1
|
Hsc_gene_10764.t1
|
— |
Q8IMC6.2 Tau-tubulin kinase homolog Asator [Drosophila melanogaster]
|
KAF7635669.1 Protein kinase domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0005575_0.849|GO:0008150_0.844|GO:0110165_0.843|GO:0005622_0.780|GO:0003674_0.752|GO:0009987_0.744|GO:0043226_0.676|GO:0003824_0.660|GO:0043229_0.654|GO:0005737_0.651|GO:0065007_0.648|GO:0050789_0.639|GO:0016020_0.630|GO:0140096_0.619|GO:0016740_0.615|GO:0008152_0.602|GO:0050794_0.598|GO:0043170_0.595|GO:0044238_0.588|GO:0016772_0.570|GO:0043227_0.553|GO:0016301_0.551|GO:0050896_0.547|GO:0016773_0.546|GO:0004672_0.541|GO:0019538_0.526
|
IPR000719+39-259_39-306_39-312+|IPR011009+37-329+|IPR050235+36-374+
|
SM00220+39-312+
|
PF00069+39-259+Protein_kinase_domain
|
— |
PTHR11909+36-374+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
313-407
|
1.000
|
1-312
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.592
|
46360.040
|
6.578
|
0.500
|
30.467
|
11.548
|
52.334
|
47.666
|
15.971
|
14.496
|
48.403
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
880.405
|
2530.201
|
874.867
|
338.396
|
123.428
|
158.094
|
244.168
|
1223.560
|
83.631
|
1729.280
|
1024.002
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.763
|
-3.040
|
-1.261
|
-1.488
|
0.372
|
0.638
|
2.847
|
-2.181
|
-4.492
|
— |
-3.356
|
— | — |
No JSON data available for plots.