Hg_chrom7_TN10mRNA_13837
Organism: Heterodera glycines Gene Locus: chr7:4413344-4416248 Feature type: polypeptideProtein Sequence
Length: 517
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.877 | 0.63 | 0.422 | 0.534 | 0.645 | 0.744 | 1.151 | 1.064 | 1.375 | 1.725 | 0.586 | 1.593 | 1.612 | 0.595 | 0.632 | 1.216 | 1.078 | 1.553 | 1.339 | 0.796 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13055
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.959
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.035
|
0.132
|
0.016
|
0.133
|
0.440
|
0.596
|
0.503
|
0.008
|
0.569
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011116
|
1.000
|
1.000
|
Hsc_gene_10763.t1
|
Hsc_gene_10763.t1
|
— |
Q6NV12.1 Sodium-dependent phosphate transporter 1-A [Danio rerio]
|
KAI1697148.1 phosphate transporter family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005315|GO:0006817|GO:0016020
|
GO:0008150_0.954|GO:0009987_0.729|GO:0005575_0.725|GO:0110165_0.725|GO:0006810_0.702|GO:0051179_0.702|GO:0051234_0.702|GO:0016020_0.699|GO:0003674_0.678|GO:0055085_0.673|GO:0071944_0.664|GO:0005886_0.655|GO:0005215_0.633|GO:0022857_0.633|GO:0015318_0.552|GO:0006811_0.529|GO:0034220_0.527|GO:0015698_0.526|GO:0098660_0.522|GO:0022804_0.519|GO:0015291_0.512|GO:0015103_0.506
|
IPR001204+11-515_31-505+
|
— |
PF01384+31-505+Phosphate_transporter_family
|
— |
PTHR11101+11-515+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-517
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.792
|
55900.520
|
8.288
|
9.500
|
15.280
|
12.379
|
35.977
|
64.023
|
9.091
|
6.190
|
52.224
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
3236.643
|
4236.538
|
2289.979
|
2835.470
|
3199.115
|
2927.998
|
2867.205
|
5888.692
|
2148.583
|
3457.001
|
2896.251
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.117
|
-0.716
|
0.417
|
0.142
|
— | — |
0.909
|
-0.898
|
— | — | — | — | — |
No JSON data available for plots.