Hg_chrom7_TN10mRNA_13838
Organism: Heterodera glycines Gene Locus: chr7:4417663-4419848 Feature type: polypeptideProtein Sequence
Length: 514
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.041 | 1.176 | 1.45 | 0.872 | 0.778 | 0.748 | 0.903 | 0.973 | 1.038 | 0.973 | 0.914 | 1.602 | 1.675 | 0.636 | 0.993 | 1.028 | 0.861 | 0.943 | 0.599 | 1.202 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13056
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.308
|
0.265
|
0.006
|
0.678
|
0.175
|
0.196
|
0.144
|
0.081
|
0.298
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011117
|
1.000
|
1.000
|
Hsc_gene_10762.t1
|
Hsc_gene_10762.t1
|
— |
P54871.2 Hydroxymethylglutaryl-CoA synthase [Caenorhabditis elegans]
|
KAI3413682.1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic [Globodera pallida]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004421|GO:0006084|GO:0008299|GO:0010142|GO:0016746
|
GO:0008150_0.938|GO:0009987_0.781|GO:0005575_0.601|GO:0110165_0.596|GO:0003674_0.559
|
IPR010122+30-508+|IPR013528+30-202+|IPR013746+203-507+|IPR016039+25-509_31-200_204-506+
|
— |
PF01154+30-202+Hydroxymethylglutaryl-coenzyme_A_synthase_N_terminal|PF08540+203-507+Hydroxymethylglutaryl-coenzyme_A_synthase_C_terminal
|
— |
PTHR43323+369-511+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5;514-514
|
1.000
|
6-513
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.612
|
57057.430
|
5.850
|
-4.000
|
25.486
|
12.840
|
45.914
|
54.086
|
12.840
|
12.646
|
54.086
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
steelblue
|
1474.006
|
1314.608
|
805.128
|
763.521
|
1763.245
|
3058.583
|
4006.003
|
2001.753
|
900.073
|
631.405
|
746.549
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.937
|
-0.921
|
— |
1.175
|
0.810
|
0.398
|
-0.711
|
1.140
|
— | — | — | — | — |
No JSON data available for plots.