Hg_chrom7_TN10mRNA_13842
Organism: Heterodera glycines Gene Locus: chr7:4427797-4434473 Feature type: polypeptideProtein Sequence
Length: 1,196
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.04 | 0.7 | 0.851 | 0.836 | 1.059 | 1.286 | 0.936 | 1.463 | 0.799 | 1.028 | 1.102 | 1.476 | 0.674 | 1.254 | 1.467 | 1.242 | 0.822 | 0.76 | 0.9 | 0.516 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13060
|
— | — |
1.556
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
PDPKRQK,HKKNEKKRKIHP,KRADYPENQARQRHR,KRSISILIAWFIDRVHKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.280
|
0.138
|
0.019
|
0.643
|
0.153
|
0.208
|
0.204
|
0.015
|
0.527
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011119
|
1.000
|
1.000
|
Hsc_gene_10759.t1
|
Hsc_gene_10759.t1
|
— |
Q55GE6.1 Probable serine/threonine-protein kinase roco7 [Dictyostelium discoideum]
|
KAI3413685.1 Mitogen-activated protein kinase kinase kinase mlk-1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005515|GO:0005524|GO:0006468
|
GO:0008150_0.940|GO:0009987_0.894|GO:0065007_0.838|GO:0005575_0.837|GO:0110165_0.836|GO:0050789_0.829|GO:0003674_0.813|GO:0050794_0.787|GO:0005622_0.761|GO:0050896_0.674|GO:0051716_0.646|GO:0003824_0.630|GO:0140096_0.611|GO:0008152_0.609|GO:0016740_0.600|GO:0005488_0.599|GO:0044237_0.599|GO:0043170_0.595|GO:0007154_0.588|GO:0023052_0.587|GO:0007165_0.569|GO:0016772_0.561|GO:0016301_0.553|GO:0016773_0.552|GO:0004672_0.549|GO:0005515_0.533|GO:0044238_0.531|GO:0048518_0.518|GO:0048522_0.518|GO:0048583_0.511
|
IPR000719+186-466+|IPR001245+189-459+|IPR001452+107-175_110-174+|IPR008271+297-309+|IPR011009+190-481+|IPR017441+192-213+|IPR036028+110-176+|IPR050167+145-460+
|
SM00220+186-466+|SM00326+110-174+
|
PF07714+189-459+Protein_tyrosine_and_serine/threonine_kinase
|
— |
PTHR23257+145-460+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-102;527-1196
|
1.000
|
103-526
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.910
|
131460.320
|
9.708
|
58.500
|
28.428
|
8.278
|
50.167
|
49.833
|
17.391
|
11.037
|
52.174
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
violet
|
2453.506
|
7448.658
|
3227.050
|
2643.002
|
1655.301
|
1974.014
|
1544.966
|
3792.606
|
2068.926
|
825.295
|
1358.280
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.436
|
-1.632
|
-0.180
|
-0.707
|
0.269
|
-0.344
|
0.847
|
-1.158
|
— | — | — | — | — |
No JSON data available for plots.