Hg_chrom7_TN10mRNA_13844
Organism: Heterodera glycines Gene Locus: chr7:4436133-4439078 Feature type: polypeptideProtein Sequence
Length: 375
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.93 | 1.24 | 0.679 | 1.747 | 0.578 | 1.846 | 0.444 | 1.6 | 0.77 | 1.477 | 0.404 | 1.255 | 2.148 | 1.128 | 1.578 | 1.333 | 0.612 | 0.808 | 0.615 | 0.157 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13062
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRSIRRNLDYKCKER
|
51-73
|
0.988
|
— | — | — | — |
0.000
|
— | — |
0.709
|
0.126
|
0.008
|
0.536
|
0.037
|
0.058
|
0.083
|
0.009
|
0.061
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001398
|
1.000
|
4.000
|
Hsc_gene_10757.t1;Hsc_gene_10757.t2;Hsc_gene_10757.t3;Hsc_gene_10757.t4
|
Hsc_gene_10757.t3
|
— |
P49743.1 Retinoic acid receptor RXR-beta [Rattus norvegicus]
|
KAF7638052.1 Nuclear receptor domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.854|GO:0065007_0.840|GO:0050789_0.827|GO:0009987_0.824|GO:0050794_0.818|GO:0003674_0.801|GO:0005575_0.791|GO:0110165_0.773|GO:0005488_0.763|GO:0005622_0.719|GO:0008152_0.696|GO:0043170_0.696|GO:0043226_0.683|GO:0019222_0.680|GO:0031323_0.680|GO:0044237_0.680|GO:0009058_0.676|GO:0043229_0.673|GO:0009059_0.672|GO:0044249_0.672|GO:0044238_0.669|GO:0080090_0.669|GO:0097159_0.668|GO:0060255_0.666|GO:0010467_0.665|GO:0009889_0.655|GO:0010556_0.655|GO:0031326_0.655|GO:0003676_0.648|GO:0010468_0.646|GO:0006139_0.640|GO:0003677_0.638|GO:0043565_0.638|GO:0016070_0.637|GO:0090304_0.637|GO:0034654_0.635|GO:0032774_0.634|GO:0141187_0.634|GO:0006351_0.628|GO:0019219_0.626|GO:0051252_0.622|GO:2001141_0.620|GO:0006355_0.616|GO:0003690_0.605|GO:1990837_0.605|GO:0050896_0.588|GO:0016020_0.570|GO:0000976_0.561|GO:0001067_0.561|GO:0006366_0.552|GO:0006357_0.551|GO:0032501_0.520|GO:0048518_0.516|GO:0048522_0.513|GO:0051716_0.510|GO:0140110_0.501
|
IPR001628+2-73_2-77_4-72_5-21_5-31_21-36_54-62_62-70+|IPR013088+1-81+|IPR050274+3-348+
|
SM00399+2-73+
|
PF00105+4-72+Zinc_finger,_C4_type_(two_domains)
|
G3DSA:3.30.50.10:FF:000006+1-98+Nuclear_receptor_subfamily_5_group_A_member
|
PTHR24083+3-348+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-375
|
3e00_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.886
|
42292.650
|
8.640
|
18.000
|
20.800
|
12.267
|
46.400
|
53.600
|
13.600
|
7.200
|
50.133
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
57.584
|
49.032
|
113.710
|
47.158
|
25.862
|
16.061
|
12.780
|
78.020
|
1.382
|
122.409
|
70.540
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.985
|
— |
-1.161
|
-0.901
|
-0.671
|
— |
2.177
|
-2.468
|
-6.701
|
5.424
|
— | — | — |
No JSON data available for plots.