SCN Proteipedia

Hg_chrom7_TN10mRNA_13846

Organism: Heterodera glycines Gene Locus: chr7:4447050-4452977 Feature type: polypeptide

Protein Sequence

Length: 1,397

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.608	1.099	1.262	0.395	1.527	0.844	0.665	0.644	1.273	1.016	1.822	1.263	1.113	0.675	1.023	0.971	0.774	0.987	1.046	0.968	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13064	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKRKR,KRKSAIVEQLQKHKFR,KRTSSGKKSPKKKAEK,RKVWLTSWMEERKQRRE,RKVLFTCFKRADKKEVK,RKDAGGENLGKEKGGGKKK,RREPTEPNPNYVAEKKPRK,KKPRKVLAREPKSEKTKKG,RKVLAREPKSEKTKKGVKR,KKGVKRTSSGKKSPKKKAE,KKKAEKAPAKKAAEPKAKK,KKAEKAPAKKAAEPKAKKM,PPPKKYLKTEKAPVAKKERNAKTAKPAKN	29-49	0.985	—	—	—	—	0.000	—	—	0.869	0.134	0.024	0.324	0.087	0.045	0.074	0.004	0.108	0.061

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011121	1.000	1.000	Hsc_gene_10755.t1	Hsc_gene_10755.t1	—	Q23670.2 DNA topoisomerase 2 top-2 [Caenorhabditis elegans]	KAF7623625.1 DNA topoisomerase 2 [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003918\|GO:0005524\|GO:0006259\|GO:0006265	GO:0005575_0.885\|GO:0110165_0.825\|GO:0005622_0.772\|GO:0008150_0.764\|GO:0016020_0.760\|GO:0043226_0.739\|GO:0009987_0.724\|GO:0043229_0.722\|GO:0043227_0.670\|GO:0043231_0.652\|GO:0003674_0.643\|GO:0005488_0.590\|GO:0071840_0.560\|GO:0016043_0.545	IPR001154+461-471_476-483_524-537_570-585_590-601_637-649_762-785_809-831_839-859_947-961_1031-1057+\|IPR001241+100-691+\|IPR002205+714-1201_732-1206_734-1198+\|IPR003594+100-214+\|IPR006171+476-593_477-579+\|IPR013506+286-449+\|IPR013757+1038-1221+\|IPR013758+736-1036+\|IPR013759+462-735+\|IPR013760+454-1217+\|IPR014721+308-433+\|IPR018522+480-488+\|IPR020568+275-437+\|IPR031660+594-732+\|IPR034157+476-596+\|IPR036890+51-283_56-298+\|IPR050634+47-1376+	SM00433+100-691+\|SM00434+714-1201+	PF00204+286-449+DNA_gyrase_B\|PF00521+734-1198+DNA_gyrase/topoisomerase_IV,_subunit_A\|PF01751+477-579+Toprim_domain\|PF02518+100-214+Histidine_kinase-,_DNA_gyrase_B-,_and_HSP90-like_ATPase\|PF16898+594-732+C-terminal_associated_domain_of_TOPRIM	G3DSA:3.30.1360.40:FF:000003+916-1022+DNA_topoisomerase_2\|G3DSA:3.30.1490.30:FF:000001+597-640+DNA_topoisomerase_2\|G3DSA:3.30.230.10:FF:000008+308-433+DNA_topoisomerase_2\|G3DSA:3.30.565.10:FF:000004+56-298+DNA_topoisomerase_2\|G3DSA:3.40.50.670:FF:000001+462-621_623-735+DNA_topoisomerase_2\|G3DSA:3.90.199.10:FF:000002+736-915+DNA_topoisomerase_2	PTHR10169+47-1376+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1198-1397	1.000	1-1197	8ke7_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.702	160238.650	8.654	22.000	34.431	9.950	53.973	46.027	18.325	16.106	45.168

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	grey	4102.640	2406.182	2765.588	4787.336	6637.101	5073.948	4062.227	3125.686	3224.399	4708.976	4072.729

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.856	0.900	0.440	-0.372	-0.310	-0.805	0.522	—	—	—	—	—

No JSON data available for plots.

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