Hg_chrom7_TN10mRNA_13847
Organism: Heterodera glycines Gene Locus: chr7:4453588-4456579 Feature type: polypeptideProtein Sequence
Length: 589
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.849 | 0.829 | 0.864 | 1.054 | 1.188 | 0.609 | 0.889 | 1.443 | 1.17 | 1.032 | 0.9 | 1.698 | 1.368 | 0.588 | 1.49 | 1.116 | 0.807 | 1.055 | 1.045 | 0.999 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13065
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
RRIERLARNTRYFRLRLK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.097
|
0.324
|
0.055
|
0.331
|
0.672
|
0.255
|
0.318
|
0.234
|
0.225
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011122
|
1.000
|
1.000
|
Hsc_gene_10754.t1
|
Hsc_gene_10754.t1
|
— |
Q20375.1 Serine palmitoyltransferase 2 [Caenorhabditis elegans]
|
KAI3413687.1 Serine palmitoyltransferase 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009058|GO:0016740|GO:0030170
|
GO:0008150_0.818|GO:0005575_0.715|GO:0110165_0.701|GO:0009987_0.668|GO:0005622_0.600|GO:0016020_0.594|GO:0008152_0.593|GO:0003674_0.575|GO:0009058_0.554|GO:0043226_0.534|GO:0044237_0.532|GO:0005737_0.528|GO:0043229_0.516|GO:0044249_0.506|GO:0044238_0.502
|
IPR001917+412-421+|IPR004839+205-564+|IPR015421+221-470+|IPR015422+204-564+|IPR015424+155-568+|IPR050087+124-567+
|
— |
PF00155+205-564+Aminotransferase_class_I_and_II
|
— |
PTHR13693+124-567+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
43-92
|
2.000
|
1-42;93-589
|
7k0p_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.765
|
66412.000
|
8.301
|
16.500
|
28.014
|
12.564
|
46.689
|
53.311
|
16.129
|
11.885
|
48.896
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightcyan
|
3326.541
|
4670.459
|
5073.369
|
2764.964
|
3736.691
|
4153.871
|
4437.157
|
6927.867
|
1265.667
|
1692.725
|
1509.700
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.110
|
-0.893
|
-0.767
|
0.403
|
0.167
|
— |
0.639
|
-0.502
|
— | — | — | — | — |
No JSON data available for plots.