Hg_chrom7_TN10mRNA_13850
Organism: Heterodera glycines Gene Locus: chr7:4460630-4461380 Feature type: polypeptideProtein Sequence
Length: 161
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.65 | 2.022 | 1.129 | 0.214 | 1.76 | 0.637 | 0.444 | 0.932 | 1.794 | 0.755 | 1.882 | 1.827 | 1.725 | 0.597 | 0.887 | 0.799 | 0.713 | 0.565 | 0.956 | 0.731 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13068
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.973
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KPEAKKFKSMKNKKPGN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.798
|
0.090
|
0.002
|
0.596
|
0.169
|
0.086
|
0.167
|
0.004
|
0.046
|
0.013
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004560
|
2.000
|
1.000
|
Hsc_gene_18433.t1
|
— | — |
Q8BV13.1 COP9 signalosome complex subunit 7b [Mus musculus]
|
KAI1708254.1 COP9 signalosome complex subunit 7b [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.902|GO:0110165_0.897|GO:0005622_0.877|GO:0043226_0.842|GO:0043229_0.832|GO:0016020_0.802|GO:0043227_0.799|GO:0008150_0.782|GO:0043231_0.779|GO:0005634_0.696|GO:0032991_0.677|GO:0140513_0.580|GO:0008180_0.540|GO:0005737_0.531
|
IPR000717+1-66_8-62+|IPR045237+8-124+
|
— |
PF01399+8-62+PCI_domain
|
— |
PTHR15350+8-124+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
141-161
|
1.000
|
1-140
|
3chm_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.659
|
18841.400
|
7.278
|
1.500
|
35.404
|
11.801
|
56.522
|
43.478
|
18.634
|
16.770
|
41.615
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1715.618
|
1729.424
|
1145.967
|
993.475
|
1057.499
|
927.383
|
864.553
|
1340.948
|
3200.537
|
2083.209
|
2562.064
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.824
|
-0.937
|
— | — |
-0.174
|
— |
0.428
|
-0.494
|
— | — | — | — | — |
No JSON data available for plots.