Hg_chrom7_TN10mRNA_13852
Organism: Heterodera glycines Gene Locus: chr7:4464467-4466763 Feature type: polypeptideProtein Sequence
Length: 425
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.848 | 0.766 | 1.412 | 0.811 | 1.255 | 1.388 | 0.392 | 1.294 | 0.889 | 1.335 | 0.998 | 1.384 | 1.961 | 0.679 | 1.345 | 0.908 | 0.656 | 0.713 | 0.181 | 1.522 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13070
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.525
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RKGFSDEMYEAARKTFK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.677
|
0.277
|
0.010
|
0.537
|
0.072
|
0.222
|
0.122
|
0.033
|
0.029
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011125
|
1.000
|
1.000
|
Hsc_gene_10750.t1
|
Hsc_gene_10750.t1
|
— | — |
KAF7633208.1 Hat1_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004402|GO:0005634|GO:0006325|GO:0016747|GO:0031509|GO:0042393
|
GO:0008150_0.950|GO:0005575_0.709|GO:0110165_0.707|GO:0005622_0.680|GO:0009987_0.671|GO:0003674_0.648|GO:0016020_0.625|GO:0043226_0.623|GO:0043229_0.606|GO:0043227_0.574|GO:0043231_0.556|GO:0071840_0.534|GO:0016043_0.529|GO:0003824_0.523
|
IPR000182+215-266+|IPR013523+286-339+|IPR016181+16-337+|IPR017380+15-417+|IPR019467+19-182+|IPR037113+24-182+|IPR048776+284-335+
|
— |
PF00583+215-266+Acetyltransferase_(GNAT)_family|PF10394+19-182+Histone_acetyl_transferase_HAT1_N-terminus|PF21183+284-335+Histone_acetyltransferase_type_B_catalytic_subunit,_C-terminal
|
— |
PTHR12046+15-417+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-425
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.663
|
49685.340
|
5.993
|
-3.500
|
31.059
|
15.059
|
50.118
|
49.882
|
15.765
|
15.294
|
42.588
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
orange
|
1825.393
|
946.902
|
1299.040
|
1539.399
|
1759.864
|
1732.271
|
1701.013
|
1611.498
|
2247.865
|
2328.949
|
2294.199
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.227
|
0.564
|
0.354
|
0.161
|
— | — |
-0.211
|
0.221
|
— | — | — | — | — |
No JSON data available for plots.