Hg_chrom7_TN10mRNA_13853
Organism: Heterodera glycines Gene Locus: chr7:4467053-4471834 Feature type: polypeptideProtein Sequence
Length: 978
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.808 | 1.284 | 1.004 | 0.599 | 0.903 | 1.206 | 0.377 | 1.431 | 1.613 | 2.045 | 0.589 | 1.022 | 1.307 | 0.708 | 0.876 | 1.183 | 0.972 | 0.945 | 0.865 | 0.541 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13071
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.679
|
0.081
|
0.013
|
0.610
|
0.175
|
0.193
|
0.191
|
0.074
|
0.126
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011126
|
1.000
|
1.000
|
Hsc_gene_10749.t1
|
Hsc_gene_10749.t1
|
— | — |
KAF7638454.1 Xpo1 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.956|GO:0005575_0.914|GO:0009987_0.911|GO:0110165_0.908|GO:0005622_0.833|GO:0051179_0.806|GO:0006810_0.793|GO:0051234_0.793|GO:0051641_0.725|GO:0051649_0.710|GO:0071705_0.702|GO:0033036_0.701|GO:0070727_0.699|GO:0008104_0.698|GO:0046907_0.695|GO:0045184_0.691|GO:0015031_0.689|GO:0006886_0.681|GO:0033365_0.679|GO:0072594_0.676|GO:0006606_0.670|GO:0006913_0.670|GO:0034504_0.670|GO:0051169_0.670|GO:0051170_0.670|GO:0003674_0.505
|
IPR011989+2-953+|IPR013598+104-208+|IPR016024+19-798+|IPR051345+8-934+
|
— |
PF08389+104-208+Exportin_1-like_protein
|
— |
PTHR12363+8-934+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-978
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.554
|
109985.850
|
5.642
|
-13.000
|
21.984
|
10.532
|
46.421
|
53.579
|
11.043
|
10.941
|
47.035
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
2340.291
|
1963.323
|
1378.720
|
1306.789
|
1413.254
|
1271.686
|
2256.006
|
1472.576
|
663.823
|
5592.524
|
3480.224
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.739
|
-0.724
|
— | — | — |
0.836
|
— |
0.757
|
-3.183
|
— | — | — | — |
No JSON data available for plots.