Hg_chrom7_TN10mRNA_13854
Organism: Heterodera glycines Gene Locus: chr7:4473693-4479787 Feature type: polypeptideProtein Sequence
Length: 770
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.74 | 1.54 | 0.685 | 0.403 | 0.974 | 2.464 | 0.773 | 1.104 | 0.866 | 0.93 | 1.043 | 1.528 | 1.01 | 1.499 | 1.325 | 1.169 | 1.065 | 0.531 | 0.3 | 0.344 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13072
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.790
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRQNILMMQLRKISR,RRKLSEDGLPLSAFDKRPR,RKLSEDGLPLSAFDKRPRV,KKRPNGLLPGAKMGRPFGRKPK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.789
|
0.065
|
0.014
|
0.433
|
0.031
|
0.060
|
0.053
|
0.019
|
0.103
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002410
|
1.000
|
3.000
|
Hsc_gene_10748.t1;Hsc_gene_10748.t2;Hsc_gene_10748.t3
|
— | — | — |
KAI3413891.1 hypothetical protein GPALN_011365 [Globodera pallida]
|
No
|
0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-31;282-770
|
1.000
|
32-281
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.942
|
85873.470
|
10.320
|
37.500
|
25.195
|
7.403
|
56.104
|
43.896
|
15.584
|
9.610
|
50.390
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkturquoise
|
2243.988
|
2231.731
|
1785.350
|
2258.446
|
1912.255
|
1707.354
|
2434.398
|
1926.341
|
4038.719
|
1442.456
|
2555.140
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.552
|
-0.120
|
0.448
|
-0.272
|
-0.149
|
0.523
|
— |
0.481
|
— | — | — | — | — |
No JSON data available for plots.