Hg_chrom7_TN10mRNA_13855
Organism: Heterodera glycines Gene Locus: chr7:4479849-4481340 Feature type: polypeptideProtein Sequence
Length: 290
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.601 | 0.401 | 1.191 | 0.713 | 1.609 | 1.415 | 1.149 | 1.552 | 1.303 | 1.072 | 1.202 | 2.231 | 1.533 | 0.928 | 0.985 | 0.69 | 0.452 | 0.784 | 0.796 | 0.609 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13073
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_10747
|
— |
26-Not_Clustered
|
0.612
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular|endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.152
|
0.243
|
0.017
|
0.192
|
0.847
|
0.341
|
0.392
|
0.006
|
0.230
|
0.629
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011127
|
1.000
|
1.000
|
Hsc_gene_10747.t1
|
Hsc_gene_10747.t1;Hsc_gene_10747.t2
|
— |
Q96AY3.1 Peptidyl-prolyl cis-trans isomerase FKBP10 [Homo sapiens]
|
KAF7640398.1 Peptidylprolyl isomerase [Meloidogyne graminicola]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003755
|
GO:0005575_0.791|GO:0110165_0.785|GO:0008150_0.660|GO:0005622_0.655|GO:0016020_0.650|GO:0003674_0.615|GO:0005737_0.601|GO:0043226_0.574|GO:0043229_0.551|GO:0009987_0.549|GO:0043227_0.511
|
IPR001179+67-157_74-160_188-277_193-281+|IPR046357+44-160_161-290+|IPR051989+47-285+
|
— |
PF00254+67-157_188-277+FKBP-type_peptidyl-prolyl_cis-trans_isomerase
|
G3DSA:3.10.50.40:FF:000006+167-282+Peptidyl-prolyl_cis-trans_isomerase
|
PTHR46046+47-285+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
289-290
|
1.000
|
1-288
|
4nnr_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.590
|
32828.480
|
5.446
|
-5.500
|
32.069
|
11.724
|
46.897
|
53.103
|
15.862
|
16.207
|
42.759
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
2369.156
|
1103.664
|
936.053
|
2430.013
|
7061.834
|
7867.072
|
2399.605
|
1313.494
|
431.021
|
1374.890
|
970.375
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.467
|
1.002
|
1.485
|
1.507
|
— |
-1.704
|
-2.693
|
1.014
|
— | — |
2.482
|
— | — |
No JSON data available for plots.