Hg_chrom7_TN10mRNA_13857
Organism: Heterodera glycines Gene Locus: chr7:4484304-4488371 Feature type: polypeptideProtein Sequence
Length: 696
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.785 | 1.236 | 1.202 | 0.842 | 0.91 | 1.805 | 0.804 | 1.149 | 1.117 | 1.048 | 0.805 | 1.183 | 1.038 | 1.105 | 0.968 | 1.273 | 0.424 | 0.958 | 1.105 | 1.099 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13075
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.599
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKRRK,RDIKRRV,RKRRRGRKSGRRARM,IGRKRRRGRKSGRRAR
|
— | — |
51-82
|
0.992
|
— | — |
0.000
|
— | — |
0.906
|
0.067
|
0.011
|
0.603
|
0.032
|
0.029
|
0.085
|
0.011
|
0.012
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011129
|
1.000
|
1.000
|
Hsc_gene_10745.t1
|
Hsc_gene_10745.t1
|
— |
Q6PCR6.2 Zinc finger RNA-binding protein [Danio rerio]
|
KAI3414211.1 DZF [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0008270
|
GO:0005575_0.795|GO:0110165_0.789|GO:0003674_0.718|GO:0005622_0.708|GO:0008150_0.682|GO:0005488_0.674|GO:0009987_0.630|GO:0043226_0.590|GO:0016020_0.579|GO:0043229_0.578|GO:0097159_0.565|GO:0003676_0.546
|
IPR003604+214-248_258-292+|IPR006561+325-693_389-642+|IPR013087+217-241_261-285+|IPR036236+204-249_257-292+|IPR043519+346-520+|IPR049401+353-516+|IPR049402+526-641+
|
SM00355+217-241_261-285+|SM00451+214-248_258-292+|SM00572+389-642+
|
PF07528+353-516+DZF_N-terminal_domain|PF12874+217-241+Zinc-finger_of_C2H2_type|PF20965+526-641+DZF_C-terminal_domain
|
— |
PTHR45762+155-302+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-73;694-696
|
1.000
|
74-693
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.717
|
77889.540
|
5.873
|
-6.000
|
24.425
|
11.207
|
48.276
|
51.724
|
12.356
|
12.069
|
51.437
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1467.489
|
2125.544
|
1434.571
|
1137.243
|
1145.623
|
1169.351
|
1410.367
|
1653.762
|
807.139
|
2036.237
|
1509.481
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.797
|
-1.040
|
-0.226
|
— | — |
0.281
|
0.397
|
— | — | — | — | — | — |
No JSON data available for plots.