Hg_chrom7_TN10mRNA_13858
Organism: Heterodera glycines Gene Locus: chr7:4494909-4496769 Feature type: polypeptideProtein Sequence
Length: 437
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.517 | 1.437 | 0.416 | 0.789 | 0.381 | 1.056 | 0.872 | 1.716 | 0.915 | 0.773 | 0.555 | 1.75 | 1.335 | 1.276 | 0.654 | 2.19 | 0.788 | 0.589 | 0.704 | 0.875 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13076
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
chloroplast
|
— | — | — |
15-39
|
1.000
|
— |
0.592
|
0.022
|
0.000
|
— |
0.755
|
0.194
|
0.021
|
0.302
|
0.113
|
0.085
|
0.119
|
0.016
|
0.055
|
0.261
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004562
|
1.000
|
2.000
|
Hsc_gene_10744.t1;Hsc_gene_10744.t2
|
Hsc_gene_10744.t1;Hsc_gene_10744.t2
|
— |
Q26417.1 Homeobox protein OTX [Strongylocentrotus purpuratus]
|
KAI1722876.1 homeobox domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000981|GO:0003677|GO:0006355
|
GO:0008150_0.942|GO:0009987_0.811|GO:0065007_0.791|GO:0050789_0.779|GO:0050794_0.768|GO:0032502_0.767|GO:0048856_0.767|GO:0032501_0.766|GO:0008152_0.733|GO:0019222_0.733|GO:0031323_0.733|GO:0044237_0.733|GO:0044238_0.727|GO:0080090_0.727|GO:0007275_0.726|GO:0009058_0.719|GO:0009059_0.719|GO:0043170_0.719|GO:0044249_0.719|GO:0060255_0.719|GO:0003674_0.718|GO:0010467_0.718|GO:0009889_0.716|GO:0031326_0.716|GO:0010468_0.712|GO:0010556_0.712|GO:0005575_0.710|GO:0005488_0.709|GO:0097159_0.709|GO:0006139_0.708|GO:0016070_0.708|GO:0032774_0.708|GO:0034654_0.708|GO:0090304_0.708|GO:0110165_0.708|GO:0141187_0.708|GO:0006351_0.707|GO:0019219_0.705|GO:0051252_0.705|GO:0003676_0.695|GO:0006355_0.693|GO:2001141_0.693|GO:0048731_0.680|GO:0003677_0.672|GO:0043565_0.672|GO:0043226_0.638|GO:0005622_0.634|GO:0043229_0.634|GO:0003690_0.622|GO:1990837_0.608|GO:0006357_0.599|GO:0006366_0.599|GO:0048518_0.596|GO:0048522_0.583|GO:0009893_0.574|GO:0031325_0.574|GO:0010604_0.570|GO:0009891_0.566|GO:0031328_0.566|GO:0010557_0.556|GO:0045935_0.555|GO:0051254_0.555|GO:0007399_0.553|GO:0000976_0.545|GO:0001067_0.545|GO:1902680_0.541|GO:0045893_0.538|GO:0016020_0.523|GO:0045944_0.501|GO:0048513_0.501
|
IPR001356+184-244_186-248_187-242_187-245+|IPR009057+181-252+|IPR017970+219-242+
|
SM00389+186-248+
|
PF00046+187-242+Homeodomain
|
G3DSA:1.10.10.60:FF:000068+181-249+Orthodenticle_homeobox_1
|
PTHR45793+122-412+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
229-357
|
2.000
|
1-228;358-437
|
2dms_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
46037.570
|
9.039
|
17.500
|
14.874
|
12.128
|
45.309
|
54.691
|
10.297
|
4.577
|
61.785
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
steelblue
|
391.525
|
882.358
|
466.023
|
262.935
|
137.323
|
198.512
|
165.020
|
217.949
|
407.987
|
533.135
|
479.500
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.148
|
-1.884
|
-0.719
|
-0.968
|
0.545
|
-0.257
|
— | — | — | — | — | — | — |