SCN Proteipedia

Hg_chrom7_TN10mRNA_13859

Organism: Heterodera glycines Gene Locus: chr7:4499515-4505617 Feature type: polypeptide

Protein Sequence

Length: 1,021

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.854	1.116	0.908	0.675	1.126	1.406	0.536	1.616	1.197	1.297	0.876	2.189	1.333	0.753	1.239	1.105	0.883	0.727	0.678	0.835	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13077	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.935

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm	—	FKRR,KKWCTKIQEVIKRKHRH	—	—	32-66	0.995	—	—	0.000	—	—	0.394	0.176	0.018	0.601	0.139	0.318	0.182	0.006	0.353	0.033

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011130	1.000	1.000	Hsc_gene_10743.t1	Hsc_gene_10742.t2;Hsc_gene_10742.t3;Hsc_gene_10743.t1	—	Q9N5D3.3 Son of sevenless homolog [Caenorhabditis elegans]	KAI1707534.1 rasGEF domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005085\|GO:0007264	GO:0008150_0.884\|GO:0005575_0.824\|GO:0009987_0.816\|GO:0110165_0.814\|GO:0065007_0.776\|GO:0050789_0.754\|GO:0050794_0.737\|GO:0005622_0.727\|GO:0050896_0.689\|GO:0003674_0.676\|GO:0051716_0.659\|GO:0007154_0.644\|GO:0023052_0.640\|GO:0007165_0.607\|GO:0005488_0.604\|GO:0032502_0.593\|GO:0048856_0.593\|GO:0005515_0.554\|GO:0032501_0.514	IPR000219+56-252_60-251+\|IPR000651+479-658_480-661_484-632_488-648+\|IPR001849+302-430_303-432+\|IPR001895+749-1021_753-1021_756-917+\|IPR008937+313-1015+\|IPR011993+279-399+\|IPR023578+457-1016+\|IPR035899+54-278_57-256+\|IPR036964+751-1020+	SM00147+749-1021+\|SM00229+479-658+\|SM00233+303-432+\|SM00325+60-251+	PF00617+756-917+RasGEF_domain\|PF00618+484-632+RasGEF_N-terminal_motif\|PF22697+313-424+SOS1/NGEF-like_PH_domain	—	PTHR23113+313-1015+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-9;650-722	2.000	10-649;723-1021	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.660	116453.040	7.650	17.500	26.836	11.753	50.245	49.755	15.083	11.753	45.446

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	1381.988	1963.881	1429.284	853.645	965.724	1346.370	2170.049	814.773	1046.700	1682.277	1409.887

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.688	-1.339	-0.635	0.147	0.493	0.698	-0.828	1.554	—	—	—	—	—

No JSON data available for plots.

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