SCN Proteipedia

Hg_chrom7_TN10mRNA_13863

Organism: Heterodera glycines Gene Locus: chr7:4513294-4516565 Feature type: polypeptide

Protein Sequence

Length: 605

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.942	1.076	1.653	0.171	1.57	1.356	0.728	1.074	1.322	1.251	0.902	1.458	1.056	0.795	1.417	0.708	0.813	0.626	0.509	0.438	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13081	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRKL,RQKRKRK	—	—	—	—	—	—	0.000	—	—	0.948	0.055	0.011	0.280	0.040	0.037	0.013	0.008	0.016	0.095

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011134	1.000	1.000	Hsc_gene_10739.t1	Hsc_gene_10739.t1;Hsc_gene_14549.t1	—	Q3SWX9.1 Double-strand-break repair protein rad21 homolog [Bos taurus]	KAH7729162.1 N terminus of Rad21 / Rec8 like protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0007062\|GO:0008278	GO:0008150_0.944\|GO:0009987_0.890\|GO:0005575_0.774\|GO:0071840_0.774\|GO:0110165_0.772\|GO:0016043_0.768\|GO:0005622_0.722\|GO:0006996_0.715\|GO:0007049_0.685\|GO:0022402_0.685\|GO:0016020_0.666\|GO:0043226_0.659\|GO:0043229_0.649\|GO:0051276_0.602\|GO:0043227_0.581\|GO:0043231_0.563\|GO:0000280_0.556\|GO:0048285_0.556\|GO:0008152_0.548\|GO:0044238_0.531\|GO:0043170_0.518\|GO:0043228_0.516\|GO:0043232_0.516	IPR006909+548-597+\|IPR006910+1-105+\|IPR023093+525-594+\|IPR036390+527-597+\|IPR039781+1-599+\|IPR049589+337-417+	—	PF04824+548-597+Conserved_region_of_Rad21_/_Rec8_like_protein\|PF04825+1-105+N_terminus_of_Rad21_/_Rec8_like_protein	—	PTHR12585+1-599+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	189-349;424-533	3.000	1-188;350-423;534-605	8rol_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.768	68391.520	4.643	-27.500	33.554	8.099	53.388	46.612	15.041	18.512	46.612

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	darkturquoise	1138.266	3203.341	1115.068	1198.649	1168.063	900.248	1267.863	926.503	666.150	812.901	750.008

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.751	-1.555	0.212	—	-0.361	0.504	—	0.594	—	—	—	—	—

No JSON data available for plots.

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