Hg_chrom7_TN10mRNA_13865
Organism: Heterodera glycines Gene Locus: chr7:4519112-4520483 Feature type: polypeptideProtein Sequence
Length: 240
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.017 | 0.678 | 0.606 | 0.431 | 2.569 | 3.526 | 0.198 | 0.417 | 1.019 | 0.901 | 1.515 | 1.225 | 0.116 | 0.401 | 1.956 | 0.476 | 1.025 | 0.694 | 0.641 | 0.49 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13083
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.464
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKNDQDQKRQQELERKQAK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.432
|
0.174
|
0.005
|
0.541
|
0.141
|
0.110
|
0.215
|
0.001
|
0.062
|
0.235
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011136
|
1.000
|
1.000
|
Hsc_gene_10737.t1
|
Hsc_gene_10737.t1
|
— |
Q2TBV6.1 Coiled-coil domain-containing protein 124 [Bos taurus]
|
XP_058583475.1 coiled-coil domain-containing protein 124 [Neofelis nebulosa]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.956|GO:0110165_0.952|GO:0005622_0.937|GO:0016020_0.892|GO:0003674_0.879|GO:0005488_0.879|GO:0005737_0.808|GO:0005829_0.683|GO:0005886_0.572|GO:0071944_0.572|GO:0043226_0.546|GO:0043229_0.526|GO:0097159_0.516|GO:0003676_0.505
|
IPR010422+16-232+|IPR054414+146-230+
|
— |
PF06244+146-230+Coiled-coil_domain-containing_protein_124_/Oxs1
|
— |
PTHR21680+16-232+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-240
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.691
|
28388.910
|
8.243
|
3.000
|
39.167
|
3.750
|
65.417
|
34.583
|
20.417
|
18.750
|
34.167
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
midnightblue
|
1754.837
|
1174.384
|
1176.339
|
1139.249
|
1483.035
|
1452.020
|
1689.509
|
1542.009
|
2233.943
|
2380.749
|
2317.832
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.228
|
-0.181
|
— |
0.348
|
— |
0.230
|
— |
0.276
|
— | — | — | — | — |
No JSON data available for plots.