Hg_chrom7_TN10mRNA_13866
Organism: Heterodera glycines Gene Locus: chr7:4520736-4522683 Feature type: polypeptideProtein Sequence
Length: 367
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.602 | 1.204 | 1.04 | 0.376 | 1.317 | 1.467 | 0.649 | 1.499 | 0.787 | 1.105 | 0.908 | 1.282 | 1.211 | 0.629 | 1.891 | 1.012 | 1.161 | 1.032 | 0.21 | 0.801 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13084
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.959
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.953
|
0.044
|
0.014
|
0.271
|
0.015
|
0.051
|
0.020
|
0.007
|
0.012
|
0.016
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011137
|
1.000
|
1.000
|
Hsc_gene_10736.t1
|
Hsc_gene_10736.t1
|
— |
Q9NXX6.2 Non-structural maintenance of chromosomes element 4 homolog A [Homo sapiens]
|
KAI1719875.1 EP-interacting inhibitor of differentiation 3 [Ditylenchus destructor]
|
No
|
-0.410
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005634|GO:0006281|GO:0030915
|
GO:0005575_0.888|GO:0110165_0.888|GO:0005622_0.839|GO:0043226_0.794|GO:0043229_0.783|GO:0016020_0.702|GO:0008150_0.683|GO:0043228_0.666|GO:0043232_0.666|GO:0043227_0.646|GO:0043231_0.638|GO:0009987_0.632|GO:0005634_0.591|GO:0032991_0.581|GO:0005694_0.560|GO:0050896_0.532|GO:0051716_0.513
|
IPR014854+273-362+|IPR027786+49-365+
|
— |
PF08743+273-362+Nse4_C-terminal
|
— |
PTHR16140+49-365+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-77;201-262
|
2.000
|
78-200;263-367
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.754
|
42205.460
|
9.207
|
11.500
|
31.880
|
10.354
|
56.948
|
43.052
|
18.256
|
13.624
|
46.866
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
1132.716
|
1020.706
|
1072.546
|
1020.371
|
1078.787
|
888.739
|
1339.443
|
970.139
|
856.949
|
1541.399
|
1248.063
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.158
|
-0.138
|
— | — |
-0.265
|
0.601
|
— |
0.607
|
— | — | — | — | — |
No JSON data available for plots.