Hg_chrom7_TN10mRNA_13867
Organism: Heterodera glycines Gene Locus: chr7:4522811-4524843 Feature type: polypeptideProtein Sequence
Length: 413
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.676 | 1.633 | 1.013 | 0.751 | 0.969 | 1.428 | 0.577 | 2.3 | 1.13 | 1.178 | 1.027 | 1.567 | 1.547 | 0.466 | 1.137 | 1.038 | 0.794 | 0.88 | 1.304 | 0.641 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13085
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.919
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
PKPS,RRKRPLTMLFKHKKQ,RRQNSFVQQKSRHNRRKRP
|
— | — |
10-47
|
0.956
|
— | — |
0.000
|
— | — |
0.085
|
0.790
|
0.020
|
0.211
|
0.182
|
0.099
|
0.121
|
0.027
|
0.030
|
0.009
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004563
|
1.000
|
2.000
|
Hsc_gene_10735.t1;Hsc_gene_10735.t2
|
Hsc_gene_10735.t1;Hsc_gene_10735.t2
|
— |
Q8CI78.1 Required for meiotic nuclear division protein 1 homolog [Mus musculus]
|
KAI1706467.1 putative ACR, yagE family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.892|GO:0110165_0.892|GO:0005622_0.826|GO:0016020_0.823|GO:0043226_0.787|GO:0043229_0.771|GO:0005737_0.761|GO:0043227_0.751|GO:0043231_0.735
|
IPR003734+159-350+|IPR051624+66-388+
|
— |
PF02582+159-350+RMND1/Sif2-Sif3/Mrx10,_DUF155
|
— |
PTHR16255+66-388+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
411-413
|
1.000
|
1-410
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.733
|
47617.030
|
8.257
|
13.500
|
28.329
|
14.044
|
53.027
|
46.973
|
16.949
|
11.380
|
45.763
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
yellow
|
846.543
|
633.758
|
721.976
|
706.939
|
767.686
|
712.985
|
1041.462
|
700.578
|
864.849
|
1072.969
|
983.775
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
0.555
|
— |
0.712
|
— | — | — | — | — |
No JSON data available for plots.