SCN Proteipedia

Hg_chrom7_TN10mRNA_13869

Organism: Heterodera glycines Gene Locus: chr7:4529081-4531622 Feature type: polypeptide

Protein Sequence

Length: 510

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.638	0.684	0.998	1.014	1.046	1.559	0.654	1.471	1.002	1.51	1.01	1.038	0.98	0.679	1.04	1.036	1.157	1.188	1.056	0.75	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_13087	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.631	0.142	0.008	0.426	0.162	0.253	0.201	0.025	0.210	0.029

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004564	1.000	2.000	Hsc_gene_10732.t1;Hsc_gene_10732.t2	Hsc_gene_10732.t1;Hsc_gene_10732.t2;Hsc_gene_10733.t1	—	Q5ZME8.1 WD40 repeat-containing protein SMU1 [Gallus gallus]	KAI3413873.1 Serine/threonine-protein kinase smu1 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000398\|GO:0005515	GO:0008150_0.939\|GO:0005575_0.901\|GO:0009987_0.892\|GO:0110165_0.889\|GO:0005622_0.839\|GO:0016020_0.795\|GO:0043226_0.776\|GO:0008152_0.764\|GO:0043229_0.752\|GO:0044238_0.744\|GO:0044237_0.736\|GO:0043170_0.731\|GO:0009058_0.726\|GO:0043227_0.723\|GO:0044249_0.708\|GO:0009059_0.702\|GO:0043231_0.693\|GO:0006139_0.685\|GO:0010467_0.674\|GO:0034654_0.671\|GO:0090304_0.669\|GO:0141187_0.662\|GO:0016070_0.660\|GO:0032774_0.660\|GO:0006396_0.594\|GO:0005634_0.589\|GO:0008380_0.563\|GO:0065007_0.551\|GO:0050789_0.542\|GO:0050794_0.523	IPR001680+203-243_220-243_220-252_254-293_261-302_267-292_296-336_297-334_304-345_339-378_340-378_346-387_381-422_424-466_469-508_471-507_476-510+\|IPR006594+7-39+\|IPR006595+41-93+\|IPR015943+192-509+\|IPR019775+230-244_365-379+\|IPR020472+230-244_280-294_365-379+\|IPR036322+213-508+\|IPR045184+3-508+	SM00320+203-243_254-293_296-336_339-378_381-422_424-466_469-508+\|SM00667+7-39+\|SM00668+41-93+	PF00400+220-243_267-292_297-334_340-378_471-507+WD_domain,_G-beta_repeat\|PF17814+7-35+LisH-like_dimerisation_domain	G3DSA:2.130.10.10:FF:001224+213-509+Protein_CBR-SMU-1	PTHR22848+3-508+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-510	6q8i_N	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.590	57548.980	7.418	7.500	26.471	10.392	49.804	50.196	14.706	11.765	48.039

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	yellow	1928.743	3078.919	1811.783	1391.319	1366.592	1129.919	2141.904	1607.077	2444.690	1906.916	2137.390

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.994	-1.283	-0.273	—	-0.260	0.934	0.403	0.558	—	—	—	—	—

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