Hg_chrom7_TN10mRNA_13870
Organism: Heterodera glycines Gene Locus: chr7:4531781-4532724 Feature type: polypeptideProtein Sequence
Length: 192
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.666 | 1.453 | 0.758 | 0.359 | 1.128 | 0.534 | 0.31 | 1.562 | 1.157 | 1.408 | 1.026 | 2.145 | 1.013 | 0.901 | 2.02 | 1.265 | 0.768 | 0.868 | 1.202 | 0.919 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13088
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.894
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
47-79
|
0.952
|
— | — | — | — |
0.000
|
— | — |
0.410
|
0.533
|
0.221
|
0.502
|
0.102
|
0.143
|
0.392
|
0.061
|
0.313
|
0.096
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011139
|
1.000
|
1.000
|
Hsc_gene_10731.t1
|
Hsc_gene_10731.t1
|
— |
Q90673.1 PRELI domain-containing protein 1, mitochondrial [Gallus gallus]
|
KAI1728448.1 PRELI-like family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.380
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005758
|
GO:0008150_0.925|GO:0005575_0.906|GO:0110165_0.896|GO:0009987_0.875|GO:0005622_0.869|GO:0043226_0.833|GO:0016020_0.827|GO:0043229_0.818|GO:0005737_0.767|GO:0043227_0.764|GO:0043231_0.761|GO:0071840_0.650|GO:0016043_0.648|GO:0005739_0.564|GO:0006996_0.528|GO:0065007_0.517|GO:0050789_0.504|GO:0007005_0.501
|
IPR006797+1-171_16-165+|IPR037365+7-154+
|
— |
PF04707+16-165+PRELI-like_family
|
— |
PTHR11158+7-154+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
159-192
|
1.000
|
1-158
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
22464.920
|
10.418
|
14.000
|
30.729
|
11.458
|
52.604
|
47.396
|
19.792
|
10.938
|
43.750
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
saddlebrown
|
792.296
|
416.291
|
538.926
|
565.890
|
658.464
|
488.661
|
656.175
|
596.568
|
149.734
|
1883.629
|
1140.531
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.306
|
0.179
|
0.188
|
-0.416
|
0.435
|
— |
0.280
|
-3.771
|
— | — | — | — |
No JSON data available for plots.