Hg_chrom7_TN10mRNA_13871
Organism: Heterodera glycines Gene Locus: chr7:4533009-4533492 Feature type: polypeptideProtein Sequence
Length: 111
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.943 | 0.629 | 1.147 | 1.243 | 0.0 | 0.924 | 0.322 | 1.802 | 1.001 | 2.07 | 0.546 | 1.06 | 2.002 | 0.866 | 0.919 | 1.802 | 0.738 | 0.956 | 1.386 | 0.795 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13089
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.969
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — | — |
0.506
|
0.000
|
0.000
|
— |
0.110
|
0.358
|
0.043
|
0.226
|
0.198
|
0.187
|
0.148
|
0.007
|
0.279
|
0.739
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011140
|
1.000
|
1.000
|
Hsc_gene_10730.t1
|
Hsc_gene_10730.t1
|
— |
Q6TLE4.1 ER membrane protein complex subunit 5 [Danio rerio]
|
KAI1726794.1 membrane magnesium transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.917|GO:0110165_0.911|GO:0016020_0.829|GO:0008150_0.820|GO:0005622_0.786|GO:0005737_0.770|GO:0043226_0.756|GO:0009987_0.755|GO:0071944_0.743|GO:0043229_0.738|GO:0043227_0.736|GO:0043231_0.736|GO:0005886_0.722|GO:0005773_0.656|GO:0012505_0.640|GO:0051179_0.633|GO:0051234_0.623|GO:0031090_0.527
|
IPR018937+15-65+
|
— |
PF10270+15-65+Membrane_magnesium_transporter
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-111
|
9c7v_5
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.805
|
12439.480
|
8.148
|
4.000
|
18.018
|
15.315
|
41.441
|
58.559
|
11.712
|
6.306
|
51.351
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
600.867
|
279.019
|
410.204
|
465.658
|
503.127
|
456.244
|
538.398
|
538.385
|
870.556
|
779.238
|
818.374
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.326
|
0.602
|
0.292
|
— | — |
0.250
|
— | — | — | — | — | — | — |