Hg_chrom7_TN10mRNA_13872
Organism: Heterodera glycines Gene Locus: chr7:4533582-4535954 Feature type: polypeptideProtein Sequence
Length: 339
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.269 | 1.098 | 0.858 | 0.814 | 0.59 | 0.832 | 0.527 | 1.622 | 1.114 | 1.953 | 0.805 | 1.388 | 0.901 | 0.737 | 1.806 | 0.969 | 0.629 | 1.028 | 0.681 | 0.434 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13090
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.077
|
0.918
|
0.021
|
0.162
|
0.055
|
0.049
|
0.090
|
0.020
|
0.058
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011141
|
1.000
|
1.000
|
Hsc_gene_10729.t1
|
Hsc_gene_10729.t1;Hsc_gene_10729.t2
|
— | — |
KAH7729823.1 Squalene/phytoene synthase [Aphelenchus avenae]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009058
|
GO:0005575_0.882|GO:0110165_0.876|GO:0016020_0.813|GO:0005622_0.810|GO:0043226_0.765|GO:0043229_0.753|GO:0005737_0.741|GO:0043227_0.731|GO:0043231_0.716|GO:0008150_0.607|GO:0005739_0.565|GO:0009987_0.554
|
IPR002060+46-320+|IPR008949+26-315_36-334+
|
— |
PF00494+46-320+Squalene/phytoene_synthase
|
— |
PTHR21181+32-339+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-339
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.617
|
37827.290
|
10.595
|
25.500
|
25.664
|
8.850
|
44.248
|
55.752
|
17.404
|
8.260
|
48.378
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
yellow
|
453.248
|
362.014
|
399.206
|
458.540
|
482.274
|
389.267
|
390.150
|
328.857
|
611.252
|
470.656
|
530.912
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.204
|
0.309
|
— |
-0.295
|
— |
-0.349
|
0.390
|
— | — | — | — | — |
No JSON data available for plots.