Hg_chrom7_TN10mRNA_13873
Organism: Heterodera glycines Gene Locus: chr7:4536108-4539329 Feature type: polypeptideProtein Sequence
Length: 577
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.746 | 0.564 | 1.04 | 0.478 | 1.589 | 1.022 | 0.701 | 1.3 | 0.886 | 1.218 | 1.129 | 1.937 | 0.915 | 0.733 | 2.334 | 0.817 | 0.682 | 0.867 | 1.466 | 0.663 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_13091
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.630
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
ARVERRRKTKAP,KKKCGEEEERQRIRAK,RKVGAKYSKLEWKKKCG,RKYTRRFLRISGWPRRERV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.810
|
0.209
|
0.033
|
0.233
|
0.026
|
0.034
|
0.087
|
0.026
|
0.063
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011142
|
1.000
|
1.000
|
Hsc_gene_10728.t1
|
Hsc_gene_10728.t1
|
— | — |
KAI1714647.1 myb-like DNA-binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.360
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR001005+220-269_224-271_227-264_313-380+|IPR009057+195-272+|IPR017930+226-273+|IPR051651+121-461+
|
SM00717+224-271_313-380+
|
PF00249+227-264+Myb-like_DNA-binding_domain
|
— |
PTHR46380+121-461+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
266-323
|
2.000
|
1-265;324-577
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.701
|
67387.170
|
10.020
|
28.500
|
36.742
|
10.052
|
53.033
|
46.967
|
21.490
|
15.251
|
41.248
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
tan
|
968.331
|
974.545
|
924.756
|
1147.132
|
1065.541
|
839.788
|
1192.249
|
544.542
|
1929.375
|
281.210
|
987.567
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.306
|
0.098
|
0.420
|
-0.138
|
-0.329
|
0.517
|
-0.731
|
1.274
|
— | — |
3.461
|
— | — |
No JSON data available for plots.